Locus 6157

Sequence ID 3L_DroMel_CAF1
Location 16,312,133 – 16,312,333
Length 200
Max. P 0.953367
window9889 window9890

overview

Window 9

Location 16,312,133 – 16,312,253
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 79.07
Mean single sequence MFE -44.37
Consensus MFE -30.83
Energy contribution -31.00
Covariance contribution 0.17
Combinations/Pair 1.36
Mean z-score -1.16
Structure conservation index 0.69
SVM decision value 0.09
SVM RNA-class probability 0.580633
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16312133 120 + 23771897
AGGGAUCCGGUGGCUAUAGCAUUGGCAGCGGCCUGCGUUCCAUUGCCCAGGGAUCGGCGGAUCAGGCUCACAGUGCAGUGACCAACCAGCAUGCAGCUGCCAAGCAGGCGGCCUAUAUAG
........(((.(((...((.((((((((.((.((((.(((...(((........)))))).).((.((((......)))))).....))).)).)))))))))).))).)))....... ( -46.00)
>DroVir_CAF1 25727 114 + 1
AGC------CUGGCUAUAGCAUAGGCAGCGGCUUGCGCUCCAUAGCCCAGGGAUCAGCGGAUCAGGCGUACACAGCCGUGGCCAAUCAGCAUGCGGCGGCCAAGCAGGCCGCCUUCAUAG
.((------(((((....)).))))).(((((((((...((...(((....((((....)))).))).......((((((((......)).))))))))....)))))))))........ ( -48.90)
>DroPse_CAF1 9589 120 + 1
AGGGGAAUCAUGGCUACAGCAUUGGCAGCGGACUGCGUUCCAUAGCCCAGGGAUCAGCGGAUCAGGCGCACAGCGCCGUGUCCAACCAGCAUGCGGCGGCCAAGCAAGCGGCAUACAUUG
............((..(.((.(((((.((.(..((((((((........)))))....((((..(((((...)))))..)))).....)))..).)).)))))))..)..))........ ( -39.00)
>DroGri_CAF1 19703 114 + 1
AGU------CUGGCUAUAGCAUUGGCAGUGGUCUGCGCUCCAUAGCACAAGGAUCCGCGGAUCAGGCGCACAGCGCUGUGGCCAAUCAACAUGCGGCAGCCAAACAAGCUGCAUUUAUCG
.(.------.((((((((((.(((((..(((((((((.(((.........)))..)))))))))...)).))).))))))))))..)...(((((((..........)))))))...... ( -45.40)
>DroMoj_CAF1 22344 114 + 1
AGG------CAGGUUACAGCAUAGGCAGCGGCCUGCGCUCCAUUGCCCAAGGAUCGGCAGAUCAGGCUUACAGCGCCGUCGCAAAUCAACAUGCUGCCGCUAAGCAGGCUGCUUUUAUAG
..(------(........))(((((.(((((((((((((.....(((....((((....)))).)))....)))((.((.(((........))).)).))...))))))))))))))).. ( -40.80)
>DroAna_CAF1 31755 120 + 1
AGGGAAGUGCUGGCUACAGCAUAGGCAGUGGCCUGCGCUCUAUCGCUCAGGGAUCAGCGGAUCAGGCUUAUAGUGCUGUGGCUAACCAACAUGCUGCUGCCAAGCAGGCGGCUUACAUAG
......((..((((((((((((((((.....((((.((......)).))))((((....))))..))))...))))))))))))....))(((..((((((.....))))))...))).. ( -46.10)
>consensus
AGG______CUGGCUACAGCAUAGGCAGCGGCCUGCGCUCCAUAGCCCAGGGAUCAGCGGAUCAGGCGCACAGCGCCGUGGCCAACCAACAUGCGGCGGCCAAGCAGGCGGCAUACAUAG
..........(((((((.((...((.((((.....))))))...(((....((((....)))).))).......)).)))))))...........((((((.....))))))........ (-30.83 = -31.00 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 16,312,213 – 16,312,333
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 76.39
Mean single sequence MFE -49.78
Consensus MFE -25.07
Energy contribution -25.35
Covariance contribution 0.28
Combinations/Pair 1.35
Mean z-score -2.38
Structure conservation index 0.50
SVM decision value 1.43
SVM RNA-class probability 0.953367
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16312213 120 + 23771897
ACCAACCAGCAUGCAGCUGCCAAGCAGGCGGCCUAUAUAGCCCAGAAUACACUGGCCCAAGCGGCUUCUCAGGCGGCGGCCACUGCACAAGCGGCUCUGGUGGGCAAGCAGGUUGUUCUC
..(((((.((.(((.((((((.....))))))........((((((......(((((...((.(((.....))).)))))))((((....)))).))))).).))).)).)))))..... ( -48.40)
>DroVir_CAF1 25801 120 + 1
GCCAAUCAGCAUGCGGCGGCCAAGCAGGCCGCCUUCAUAGCCAAAAACACGCUGGCACAGGCCGCAUCGCAGGCCGCCGCAACGGCGCAGGCAGCACUGGCCGGCAAGCAGGUCAUACUC
(((........((((((((((..((..((.((((.....((((.........))))..)))).))...)).))))))))))..(((.(((......)))))))))............... ( -52.90)
>DroGri_CAF1 19777 120 + 1
GCCAAUCAACAUGCGGCAGCCAAACAAGCUGCAUUUAUCGCUAAAAAUACAUUGGCACAGGCUGCCUCUCAGGCAGCGGCCACUGCGCAAGCAGCACUGGCUGGCAAGCAAGUGUUGCUG
...........(((((((((.......))))).................((.((((....((((((.....)))))).)))).))))))(((((((((.(((....))).))))))))). ( -49.30)
>DroMoj_CAF1 22418 120 + 1
GCAAAUCAACAUGCUGCCGCUAAGCAGGCUGCUUUUAUAGCCAAAAACACCUUGGCGCAAGCAGCAUCACAGGCAGCUGCCACAGCGCAAGCGGCGCUCGCGGGCAAGCAGGUGAUACUA
....((((...((((((((((..((..(((((((.....(((((.......)))))..)))))))......(((....)))...))...))))))(((....))).))))..)))).... ( -48.30)
>DroAna_CAF1 31835 120 + 1
GCUAACCAACAUGCUGCUGCCAAGCAGGCGGCUUACAUAGCCCAAAACACCCUGGCUCAGGCGGCAUCCCAAGCGGCCGCCACUGCGCAGGCGGCCUUGGUGGGAAAGCAGGUAGUUCUC
((((.((....((((((((((.((((((.((((.....))))........))).)))..)))))).(((((...(((((((........)))))))....))))).)))))))))).... ( -51.20)
>DroPer_CAF1 5581 120 + 1
UCCAACCAGCAUGCGGCGGCCAAGCAGGCGGCAUACAUUGCACAGAACACCCUCGCGCAAGCGGCAUCCCAGGCAUCGGCCACGGCCCAGGCUGCGCUUGCGGGGAAGGAGGUGGUGCUG
......((((((...((.(((.....))).))...............(((((((.((((((((........(((....))).((((....)))))))))))).)...)).)))))))))) ( -48.60)
>consensus
GCCAACCAACAUGCGGCGGCCAAGCAGGCGGCAUACAUAGCCAAAAACACCCUGGCACAAGCGGCAUCCCAGGCAGCGGCCACUGCGCAAGCGGCACUGGCGGGCAAGCAGGUGGUACUC
........((.(((.((((((.....)))))).......(((..........((((....((.((.......)).)).))))((((....))))....)))......))).))....... (-25.07 = -25.35 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:32 2006