Locus 6156

Sequence ID 3L_DroMel_CAF1
Location 16,306,162 – 16,306,279
Length 117
Max. P 0.988705
window9888

overview

Window 8

Location 16,306,162 – 16,306,279
Length 117
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 94.36
Mean single sequence MFE -49.42
Consensus MFE -42.78
Energy contribution -42.06
Covariance contribution -0.72
Combinations/Pair 1.15
Mean z-score -1.98
Structure conservation index 0.87
SVM decision value 2.13
SVM RNA-class probability 0.988705
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16306162 117 - 23771897
GCGGAGGUCCAAAGGAGUUCAGGGAGCUUGGCGGAGGUCCGUAAGAUCCAGGAGGUCCACCCAUUGGUGGACGACCACUGAAGUAGCUUGGUGGGGGCAUGGGCUUAGCCGGACCAU
.....(((((....((((((...))))))(((..((((((((..(.(((.....(((((((....)))))))..((((..(......)..)))))))))))))))).)))))))).. ( -52.00)
>DroSec_CAF1 19344 117 - 1
GCGGAGGUCCAAAGGAGUUCAGGGAGCUUGGCGGAGGUCCGUAAGAUCCAGGAGGUCCACCCAUUGGCGGGCGACCACUAAAGUAGCUUGGUGGGGGCAUGGGCUUAGCUGGACCAU
.....((((((..(((.(((..(((.((((.(((....))))))).)))..))).))).(((((......((..(((((((......)))))))..)))))))......)))))).. ( -49.00)
>DroSim_CAF1 19110 117 - 1
GCGGAGGUCCAAAGGAGUUCAAUGAGCUGGGCGGAGGUCCGUAAGAUCCAGGAGGUCCACCCAUUGGCGGGCGACCACUGAAGUAGCUUGGUGGGGGCAUGGGCUUAGCUGGACCAU
.....((((((...(((((((....((((((.(((..(((..........)))..))).)))...)))..((..((((..(......)..))))..)).)))))))...)))))).. ( -47.50)
>DroEre_CAF1 20475 117 - 1
GCGCAGGACCAAAGGAGUUCAGGGAGCUUGGUGGGGGUCCGUAGGAUCCAGGAGGUCCACCCAUUGGCGGGCGACCACUGAAGUAGCUUGGUGGGGGCAUGGGCUUAGCUGGACCAU
.....(((((.(..((((((...))))))..)...)))))...((.(((((.(((((((.((......))((..((((..(......)..))))..)).)))))))..))))))).. ( -47.10)
>DroYak_CAF1 26747 117 - 1
GCGGAGGUCCAAAGGAGUUCAGGGAGCUUGGUGGGGGUCCGUAGGAUCCUGGAGGUCCACCCAUUGGCGGGCGACCGCUGAAGUAGCUUGGUGGGGGCAUGGGCUUUGCUGGACCAU
.....((((((..((((((((.(((.(((....(((((((...))))))).))).))).(((((((((((....)))))..........))))))....))))))))..)))))).. ( -51.50)
>consensus
GCGGAGGUCCAAAGGAGUUCAGGGAGCUUGGCGGAGGUCCGUAAGAUCCAGGAGGUCCACCCAUUGGCGGGCGACCACUGAAGUAGCUUGGUGGGGGCAUGGGCUUAGCUGGACCAU
.....(((((....((((((...))))))(((..((((((((..(.(((.....((((.((....)).))))..(((((((......))))))))))))))))))).)))))))).. (-42.78 = -42.06 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:30 2006