Locus 6155

Sequence ID 3L_DroMel_CAF1
Location 16,299,631 – 16,299,721
Length 90
Max. P 0.715369
window9887

overview

Window 7

Location 16,299,631 – 16,299,721
Length 90
Sequences 5
Columns 91
Reading direction reverse
Mean pairwise identity 91.70
Mean single sequence MFE -24.68
Consensus MFE -19.19
Energy contribution -18.67
Covariance contribution -0.52
Combinations/Pair 1.14
Mean z-score -1.68
Structure conservation index 0.78
SVM decision value 0.39
SVM RNA-class probability 0.715369
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16299631 90 - 23771897
UCACCUCCUCGACACUCCUGGGAACAUUGCUAGAUUUUCGGCUACUGACCCUGGGUCAUUCCCAUG-GAAAUUCAGGAGAGUACAACAGCC
..(((((((.((...(((((((((....(((........)))...(((((...))))))))))).)-))...))))))).))......... ( -27.00)
>DroSec_CAF1 11757 90 - 1
UCACCUCCUCGACACUUCUGGGAACAUUGCUAGAUUUUCGGCUACUGACCCUGGGUCAUUCCCAUG-GAAAUUGAGGAGAGUACAACAGCC
..((((((((((...(((((((((....(((........)))...(((((...))))))))))).)-))..)))))))).))......... ( -28.20)
>DroSim_CAF1 12459 90 - 1
UCACCUCCUCGACACUUCUGGGAACAUUGCUAGAUUUUCGGCUACUGACCCUGGGUCAUUCCCAUG-GAAAUUGAGGAGAGUACAACAGCC
..((((((((((...(((((((((....(((........)))...(((((...))))))))))).)-))..)))))))).))......... ( -28.20)
>DroEre_CAF1 13554 91 - 1
UCACCUCCUCUGCUCUUCUGGGAACAUUGCUAGAUCUUCGGCUACUGACCCUGGGGCAUUCCUAUUCCUAAUUCAGGAGAGUACAACAGCC
..........((((((((((((((...((((......((((...))))......))))......)))).....))))))))))........ ( -20.00)
>DroYak_CAF1 19584 90 - 1
UCACCUCCUCCGCCCUUCUACGAACAUUGCUAGAUUUUCGGCUACUGACCCUGGGUCAUUCGUAUG-AAAAUUCAGGAGAGUACAACAGCC
..(((((((......(((((((((....(((........)))...(((((...))))))))))).)-)).....))))).))......... ( -20.00)
>consensus
UCACCUCCUCGACACUUCUGGGAACAUUGCUAGAUUUUCGGCUACUGACCCUGGGUCAUUCCCAUG_GAAAUUCAGGAGAGUACAACAGCC
..(((((((.........((((((....(((........)))...(((((...)))))))))))..........))))).))......... (-19.19 = -18.67 +  -0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:29 2006