Locus 6154

Sequence ID 3L_DroMel_CAF1
Location 16,296,044 – 16,296,143
Length 99
Max. P 0.956579
window9886

overview

Window 6

Location 16,296,044 – 16,296,143
Length 99
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -34.60
Consensus MFE -27.91
Energy contribution -28.25
Covariance contribution 0.34
Combinations/Pair 1.31
Mean z-score -2.26
Structure conservation index 0.81
SVM decision value 1.47
SVM RNA-class probability 0.956579
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16296044 99 + 23771897
GCCUCUCCAGGGAUUUAACCAAGUUCUUCCAACGCCUGCUGGAGCCUAAAGUCCAGCGAACGUGGGCGUAUGCGGAAUUUGAUUGAGACCCUCGUGUGC---
((..(.(.((((.(((((.((((((((..((((((((((((((........))))))......)))))).)).)))))))).))))).)))).).).))--- ( -35.00)
>DroVir_CAF1 3064 92 + 1
GCCUCUAUGCGGACUUGACCAAGUUUUUCAAACGACAACCAAUACCUAAAUG---------CGGGUCGUUUACAAAAUUUGAUUGAACCUG-CAUAGAUAGC
...(((((((((..(..(.((((((((..(((((((..((.((......)).---------.)))))))))..)))))))).)..)..)))-)))))).... ( -27.40)
>DroSec_CAF1 8317 99 + 1
GCUUCUCCAGGGACUUAAGCAAGUUCUUCCAACGCCUGCUGGAGCCUAAAGUCCGGCGAACGUGGGCGUUUACGGAAUUUGAUUGAGACCCUCGUGUGC---
((..(.(.((((.(((((.((((((((...((((((..(....(((........)))....)..))))))...)))))))).))))).)))).).).))--- ( -38.40)
>DroSim_CAF1 8460 99 + 1
GCUUCUCCAGGGAUUUAAGCAAGUUCUUCCAACGCCUGCUGCAGCCUAAAGUCCGGCGAACGUGGGCGUUUACGGAAUUUGAUUGAGACCCUCGUGUGC---
((..(.(.((((.(((((.((((((((...((((((..(....(((........)))....)..))))))...)))))))).))))).)))).).).))--- ( -36.60)
>DroEre_CAF1 9675 99 + 1
GCUUCUCUAGGGAUUUAAGCAAGUUCUUCCAACGCCCGCCGGAGCCUAAAGUCCGGCGAACGUGGACGUUUGCGGAAUUUGAUUGAAACUCUCGUGUGU---
((..(.(.((((.(((((.(((((((.((((.((..(((((((........)))))))..))))))((....))))))))).))))).)))).).).))--- ( -33.00)
>DroYak_CAF1 15623 99 + 1
AAUUCUCAAGGGAUUUAAGCAAGUUCUUCGAACGCCUGCCGGAGCCUAAAGUCCGGCGAACGUGGGCGUUUGCGGAAUUCGAUUGAAACCCUCGUGUGC---
........((((.(((((.(.((((((.(((((((((((((((........))))))......))))))))).)))))).).))))).)))).......--- ( -37.20)
>consensus
GCUUCUCCAGGGAUUUAAGCAAGUUCUUCCAACGCCUGCCGGAGCCUAAAGUCCGGCGAACGUGGGCGUUUACGGAAUUUGAUUGAAACCCUCGUGUGC___
........((((.(((((.((((((((...(((((((((....(((........)))....)))))))))...)))))))).))))).)))).......... (-27.91 = -28.25 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:28 2006