Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,295,487 – 16,295,600 |
Length | 113 |
Max. P | 0.616348 |
Location | 16,295,487 – 16,295,600 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 74.49 |
Mean single sequence MFE | -33.17 |
Consensus MFE | -20.11 |
Energy contribution | -19.82 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.50 |
Mean z-score | -1.34 |
Structure conservation index | 0.61 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616348 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16295487 113 - 23771897 UAAUCGUAGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGGCCAGGUCAAAGGGACAGUAAAAGAUGCAGUACCUUU--UUGAGUGGAAACAAAG-----C ...(((((..(.((((....)))))..)))))..((((...((((((....)))))).))))...((((((((((.(((.....))).)).)).))--)))).((....))...-----. ( -36.90) >DroSec_CAF1 7760 113 - 1 UAAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGUGCCAGGUCAAAAGGACAGUAAAAGAUGCAGUACCUGU--UUGAGUGGAAACAAAG-----C ...((((..(((((.(.((((((((.((((.....))....)).)))))))).)))))).(((..((((((((((.(((.....))).)).))).)--)))).)))..))))..-----. ( -33.00) >DroSim_CAF1 7903 113 - 1 UUAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCAUGGCGUGUGCCAGGUCAAAAGGACAGUAAAAGAUGCAGUACCUGU--UUGAGUGGAAACAAAG-----C (((((((((((.(((((.(((((...........)))))...)))))))).((((....)))).........)))))))).....((((...))))--.....((....))...-----. ( -31.90) >DroEre_CAF1 9117 117 - 1 UUAUUGUGGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGCCCAGGUCGAAGGGACAGUAGAAGAUGCAGUACCUAC--UUGAUUGGAAAUAAAUCUAAG- ...(((((..(.((((....)))))..)))))..(((((...(((((....))))))))))(((((...(((.((.(((.....))).)).)))))--))).(((((......))))).- ( -34.20) >DroWil_CAF1 979 110 - 1 UAAUGGCCGUCAUAGUGGCAGCUAGGACACGAAAUGUAACUGUACGGGCCACUGCAUGACCCAAAUCCAAGGGACAGAAGAAGAUGAUGUACCUGU--CACA---AGAUGAGAU-----U ...(((((((.(((((.(((....(....)....))).))))))).)))))((...((.(((........))).))..))....((((......))--))..---.........-----. ( -23.80) >DroAna_CAF1 9972 112 - 1 UAAUGGUGGCCAUGGCGGUGGCCACAAGACGAAAUGACAUGGUAGAGGCCACCGUAUGGCCCAGGUCGAAGGGACAGAAAAAGAUUAUGUACCUGUGCUUGGGUAAGAAAUA-------- ..(((((((((.((((....))))((........))..........)))))))))...((((((((...(((.(((...........))).)))..))))))))........-------- ( -39.20) >consensus UAAUUGUCGACAUGGCGGUGGCCAGGAUGCGAAAGGCCAAAGUGCUGGUCACGGCGUGGCCCAGGUCAAAGGGACAGUAAAAGAUGCAGUACCUGU__UUGAGUGGAAACAAAG_____C .........((((.((.((((((((.((((.....))....)).)))))))).))))))......((((.(((((.(((.....))).)).)))....)))).................. (-20.11 = -19.82 + -0.30)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:27 2006