Locus 6152

Sequence ID 3L_DroMel_CAF1
Location 16,293,158 – 16,293,275
Length 117
Max. P 0.596381
window9884

overview

Window 4

Location 16,293,158 – 16,293,275
Length 117
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 82.63
Mean single sequence MFE -45.83
Consensus MFE -30.50
Energy contribution -31.76
Covariance contribution 1.25
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 0.67
SVM decision value 0.13
SVM RNA-class probability 0.596381
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16293158 117 + 23771897
GUGUGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUUGCUGGCCCAAAACAGGGGCGGGCGUGG-AGCAUGCCAAGGGGGUAGAUUGGAUAGGUACCAGUGGUAGAGCCCCGCUCG
.....(((((((.((((.((....)).)))).)))))))(((.((((.......)))).)))((((-.((.(((((....((((..(.....)..))))..)))))..)).))))... ( -46.80)
>DroSec_CAF1 5322 116 + 1
GUGUGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUUGCUCGACCA-AGCAGGGGCGGGCGUGG-AGCAUGCCAAGGGGGUAGUUUGGAUAGGUACCAACGGUACAGUCCCCCUCG
((((((((((((.((((.((....)).)))).)))))))(((((.((.-.....)).)))))....-..)))))...(((((......((((..(((((...))))).))))))))). ( -43.40)
>DroSim_CAF1 5632 116 + 1
GUGUGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUUGCUCGCCCA-AGCAGGGGCGGGCGUGG-AGCAUGCCAAGGGGGUAGAUUGGAUAGGUAACAACGGUACAGUCCCCCUCG
((((((((((((.((((.((....)).)))).)))))))((((((((.-.....))))))))....-..)))))...(((((..(((((....(.......)....))))).))))). ( -47.30)
>DroEre_CAF1 6711 105 + 1
GUGCGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUGGCUGGCCCA-AGCAGGGGCGGGCGUGG-AGCAUGCCAAGGGGGUGGAU----------CCAUCGAUGGAGCC-CCCUCG
((((..((((((.((((.((....)).)))).)))))).(((.((((.-.....)))).)))....-.)))).....(((((.((.(----------(((....)))).))-))))). ( -48.40)
>DroYak_CAF1 12579 105 + 1
AUGUGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUUGCUGGCCCA-AGCAGGGGCGGGCGUGG-AGCAUGCCAAGGGGGUAGAU----------CCAUCGGUACAGCC-CCCUCG
((((.(((((((.((((.((....)).)))).)))))))(((.((((.-.....)))).)))....-.))))....(((((((.(((----------(....))).).)))-)))).. ( -43.90)
>DroAna_CAF1 7571 106 + 1
GUGUGAAUUGCUGUGCCAUGAAAUCACGGCGGAGCAGUUGUUGGC-CA-UCCAGAGGCGGAUGUGGCAACAGGCCUGGGGGGCAGU----------GCCAUCGAUACGCCCCCACUCA
.....(((((((.((((.((....)).)))).)))))))...(((-((-(((......)))).((....))))))..((((((.((----------(.......)))))))))..... ( -45.20)
>consensus
GUGUGAAUUGCUGUGCCAUGAAAUCACGGUGGAGCAGUUGCUGGCCCA_AGCAGGGGCGGGCGUGG_AGCAUGCCAAGGGGGUAGAU_________ACCAUCGGUACAGCCCCCCUCG
.....(((((((.((((.((....)).)))).)))))))....((((.......)))).((((((....)))))).((((((............................)))))).. (-30.50 = -31.76 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:26 2006