| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,287,197 – 16,287,316 |
| Length | 119 |
| Max. P | 0.738220 |
| Location | 16,287,197 – 16,287,316 |
|---|---|
| Length | 119 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.89 |
| Mean single sequence MFE | -28.70 |
| Consensus MFE | -17.86 |
| Energy contribution | -18.86 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.738220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16287197 119 + 23771897 UUUCUUGGUAUUCAUUUUCCACAUUACCAGAUACCAGAUGCCAGAUGGCAGAUAGUUAUCUUAAGUACGUGUAACUGUCGCUCGAUCCAAAGUCGAGCCCCGAAAAC-UGAAAACACAAU ....(((((.(((((((((...................((((....))))((((((((((........).)))))))))(((((((.....)))))))...))))).-)))).)).))). ( -30.60) >DroEre_CAF1 881 105 + 1 UUUCUGGGUAUUCAUUUUCCACAUUACCAGAUGCCAGA--------------UGGUUAUCUUAAGUACGUGUAACUGUCGCUCGACCCAAAGUCGAGCCCCGAAAAC-UGAAAACACAGU ...(((.((.(((((((((.(((((((.(((((((...--------------.)).)))))...))).))))....(..(((((((.....)))))))..)))))).-)))).)).))). ( -28.90) >DroAna_CAF1 655 115 + 1 UUUCUGGGUAUUCAUUUUCCACAUUACGA-CUGCCAGAUGCCAGUUGCCAGAUACUUAUCUUAAGUACGUGUAACUGUCGCUCGAUCCACAGUCGAGCCCCGAAAAAAUAACAACA---- ((((.(((.....................-.........(.(((((((..(.((((((...)))))))..))))))).)(((((((.....))))))))))))))...........---- ( -26.60) >consensus UUUCUGGGUAUUCAUUUUCCACAUUACCAGAUGCCAGAUGCCAG_UG_CAGAUAGUUAUCUUAAGUACGUGUAACUGUCGCUCGAUCCAAAGUCGAGCCCCGAAAAC_UGAAAACACA_U ..(((.((((((.................)))))))))............((((((((((........).)))))))))(((((((.....)))))))...................... (-17.86 = -18.86 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:25 2006