| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,286,290 – 16,286,410 |
| Length | 120 |
| Max. P | 0.911083 |
| Location | 16,286,290 – 16,286,410 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 75.56 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -22.15 |
| Energy contribution | -21.93 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.82 |
| SVM decision value | 1.07 |
| SVM RNA-class probability | 0.911083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16286290 120 + 23771897 GUCCACAGCAGGAAAUGUCAGAUUAUGAUGGAUUUGGCAGGCCUGAACCAAAGCAAGGGCAACGAUUACCAAAGUGUAGAGCAGCUGCAAACAAAUUAACAUUGAUUUCAAUUUGUAAAU ((((....((((...(((((((((......)))))))))..))))...........))))..............(((((.....))))).(((((((............))))))).... ( -24.66) >DroEre_CAF1 4 120 + 1 CUCCACAGCAGGAAAUGUCAGAUUAUGAUGGAUUUGGCAGGCCUGAACCAAAGCAAGGGCAAUGAUCACCAAGGUGUAGAGCAGCUGCAAUGAAAUUGAAAAUGAUUUUAAGUUGUAAAU ....((((((((...(((((((((......)))))))))..)))........(((...((......(((....)))....))...)))..(((((((......))))))).))))).... ( -28.00) >DroAna_CAF1 154 99 + 1 GCUAACAGCAGGAAAUGUCAGAUUAUGAUGGAUCUGACAGGCCUGAACCAAAGCGAGGGCCAAUAUAACCAAGGUGUAGAGCAGCUGGAGUCGAA-----AAA----------------G .....((((.((...(((((((((......)))))))))(((((............))))).......))...((.....)).))))........-----...----------------. ( -27.90) >consensus GUCCACAGCAGGAAAUGUCAGAUUAUGAUGGAUUUGGCAGGCCUGAACCAAAGCAAGGGCAAAGAUAACCAAGGUGUAGAGCAGCUGCAAUCAAAUU_A_AAUGAUUU_AA_UUGUAAAU .....(((((((...(((((((((......)))))))))..)))...((.......))((......(((....)))....)).))))................................. (-22.15 = -21.93 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:24 2006