| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,268,548 – 16,268,653 |
| Length | 105 |
| Max. P | 0.565206 |
| Location | 16,268,548 – 16,268,653 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 84.89 |
| Mean single sequence MFE | -30.38 |
| Consensus MFE | -23.63 |
| Energy contribution | -23.96 |
| Covariance contribution | 0.34 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.565206 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16268548 105 + 23771897 GCCUGAACGGAUUCUGGCCGCUUGUCUCGGGUCUUGGCCAUAAACCAGAUUAUUAUUCGUGGCCAAUUUCUGUUCGGCUCGCUCGCCUCCUCAACCGAGUUUGCC ....(((((((...(((((((..((....(((((.((.......)))))))...))..)))))))...)))))))(((..(((((..........)))))..))) ( -36.20) >DroSec_CAF1 19758 92 + 1 GCCUGAACGGAUUCU--------GUCCCGGGU-UUGGCCAUAAACCAGAUUAUUAUUCGUGGCCAAUUUCUGUUCGGCUC----ACCGCCUUCACCGAGUUUGCC (((.(((((((.(((--------(...)))).-((((((((.................))))))))..))))))))))..----..................... ( -23.23) >DroEre_CAF1 19944 99 + 1 GCCUGAACGGAUUCUGGCCGCCUGUCCCGGGUCUUGGCCAUAAACCAGAUUAUUAUUCGUGGCCAAUUUCUGUUCGGCUC----ACCUUCUCCUCCGAGCU--CC (((.(((((((...(((((((..((....(((((.((.......)))))))...))..)))))))...))))))))))..----.....(((....)))..--.. ( -31.70) >consensus GCCUGAACGGAUUCUGGCCGC_UGUCCCGGGUCUUGGCCAUAAACCAGAUUAUUAUUCGUGGCCAAUUUCUGUUCGGCUC____ACCUCCUCCACCGAGUUUGCC (((.(((((((.(((((.........)))))..((((((((.................))))))))..))))))))))...........(((....)))...... (-23.63 = -23.96 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:23 2006