Locus 6147

Sequence ID 3L_DroMel_CAF1
Location 16,266,323 – 16,266,426
Length 103
Max. P 0.754965
window9876

overview

Window 6

Location 16,266,323 – 16,266,426
Length 103
Sequences 4
Columns 103
Reading direction forward
Mean pairwise identity 94.98
Mean single sequence MFE -34.02
Consensus MFE -33.42
Energy contribution -33.17
Covariance contribution -0.25
Combinations/Pair 1.13
Mean z-score -1.52
Structure conservation index 0.98
SVM decision value 0.49
SVM RNA-class probability 0.754965
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16266323 103 + 23771897
UGGCUGGAACGCUGGCCCACAUCUGUGUGCCAGUCAAGUAGAAGAAAUAACCAGGAGUUGGGAGCCAAUUUAAUGGGUGUGGGUGCUGCAACAGGUAUCCACA
(((((((.((((.((......)).)))).))))))).............(((..(((((((...)))))))....)))(((((((((......))))))))). ( -36.30)
>DroSec_CAF1 17664 103 + 1
UGGCUGGAACGCUGGCCCACAUCUGCGUGCCAGUCAAGUAGAAGCAAUAACCAGGAGUUGGGAGCCAAUUUAAUGGGUGUGGGUGCUGCAACAGGUAUCCACA
(((((((.((((.((......)).)))).))))))).............(((..(((((((...)))))))....)))(((((((((......))))))))). ( -38.20)
>DroSim_CAF1 16196 103 + 1
UGGCUGGAACGCUGGCCCACAUCUGCGUGCCAGUCAAGUAAAAGCAAUAACCAGGAGUUGGGAGCCAAUUUAAUGGGUGUGGGUGCUGCAACAGGUAUCCACA
(((((((.((((.((......)).)))).))))))).............(((..(((((((...)))))))....)))(((((((((......))))))))). ( -38.20)
>DroEre_CAF1 17644 102 + 1
UGGUUGGAACGCUGUCCCACAUCUGCGUGCCAGUCAAGUAGAAGAAAUAGCCAGGAGUUGGGAGUGAAUUUAAUGGGUGUGGGUGCUGCAACAGGUAU-CACU
((..(((.((((.(........).)))).)))..)).((((.....(((.(((.(((((.......)))))..))).))).....)))).........-.... ( -23.40)
>consensus
UGGCUGGAACGCUGGCCCACAUCUGCGUGCCAGUCAAGUAGAAGAAAUAACCAGGAGUUGGGAGCCAAUUUAAUGGGUGUGGGUGCUGCAACAGGUAUCCACA
(((((((.((((............)))).))))))).............(((..(((((((...)))))))....)))(((((((((......))))))))). (-33.42 = -33.17 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:18 2006