Locus 6145

Sequence ID 3L_DroMel_CAF1
Location 16,262,260 – 16,262,368
Length 108
Max. P 0.651937
window9872

overview

Window 2

Location 16,262,260 – 16,262,368
Length 108
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 81.74
Mean single sequence MFE -29.03
Consensus MFE -18.28
Energy contribution -20.16
Covariance contribution 1.88
Combinations/Pair 1.10
Mean z-score -1.85
Structure conservation index 0.63
SVM decision value 0.25
SVM RNA-class probability 0.651937
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16262260 108 - 23771897
AAUUGGUAGGCCAUUAAAAUGCAAUUACAGGCCACCAGAGUU-UGGUGGUCAGCUGCAAUCGGAACCAGCACGAAU---AAAACCAAA-AAUCCAAAACAACCGAGUGGGUGG
..(((((......................(((((((((...)-)))))))).((((..........))))......---...))))).-.(((((...(....)..))))).. ( -24.80)
>DroSec_CAF1 13714 110 - 1
AAUUGGGGGGCCAUUAAAAUGCAAUUACAGGCCACCAGAGUUUUGGUGGUCAGCUGCAAUCGGAACCAGCACGAAU---AAAACCAAAAAAACCUAAACCACCGAGUGGGUGG
..(((((......................(((((((((....))))))))).((((..........))))......---.............))))).(((((.....))))) ( -30.40)
>DroSim_CAF1 12179 110 - 1
AAUUGGGAGGCCAUUAAAAUGCAAUUACAGGCCACCAGAGUUUUGGUGGUCAGCUGCAAUCGGAACCAGCACGAAU---AAAACCAAAAAAACCUAAACCACCGAGUGGGUGG
..(((((......................(((((((((....))))))))).((((..........))))......---.............))))).(((((.....))))) ( -30.20)
>DroEre_CAF1 13643 110 - 1
AAUUGGGAGGCCAUUAAAAUGCAAUUACAGGCCAACAGGGUU-UGGUGGUCAGCUGCAAUCGGAACCAGCACCAAACCAAAAACCAA--AAACCAAAACCACCGAGUGGGUGG
..((((..((((.................)))).....((((-(((((.(...(((....)))....).))))))))).....))))--.........(((((.....))))) ( -33.63)
>DroAna_CAF1 13045 92 - 1
AAUUGGGAGGCCAUUAAAAUGCAAUUACAGGCCAACAGAGCU-----GACCACCA---------GGCCGCAAGACC---UAGCCCAAA-A---CUGCACCGCAGAGUGGGUGG
...(((..((((.................))))..((....)-----).)))(((---------((.(....).))---).(((((..-.---((((...))))..))))))) ( -26.13)
>consensus
AAUUGGGAGGCCAUUAAAAUGCAAUUACAGGCCACCAGAGUU_UGGUGGUCAGCUGCAAUCGGAACCAGCACGAAU___AAAACCAAA_AAACCUAAACCACCGAGUGGGUGG
..((((.......................((((((((......)))))))).((((..........)))).............))))...........(((((.....))))) (-18.28 = -20.16 +   1.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:14 2006