Locus 6144

Sequence ID 3L_DroMel_CAF1
Location 16,261,081 – 16,261,180
Length 99
Max. P 0.906354
window9871

overview

Window 1

Location 16,261,081 – 16,261,180
Length 99
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 78.77
Mean single sequence MFE -23.56
Consensus MFE -13.84
Energy contribution -15.16
Covariance contribution 1.32
Combinations/Pair 1.19
Mean z-score -2.14
Structure conservation index 0.59
SVM decision value 1.05
SVM RNA-class probability 0.906354
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16261081 99 - 23771897
UUUUCUCA-----GCUGGAAACCCCCAGAAGACAAUUGUUCAUUUCCACGACGAAAUGAAUGGAAAUA-----UAAAAGUUUCCGUUAGAGCAAAAGUCGC-----------CGACAAUA
........-----.((((......))))..(((..(((((((((((......))))).(((((((((.-----.....))))))))).))))))..)))..-----------........ ( -24.80)
>DroSec_CAF1 12528 99 - 1
UUUUCUCA-----GCUGGAAACCCCCAGAAGACAAUUGUUCAUUUCCACGCCGAAAUGAAUGGAAAUA-----UAAAAGUUUCCGUUAGAGCAAAAGUCGC-----------CGACAAUA
........-----.((((......))))..(((..(((((((((((......))))).(((((((((.-----.....))))))))).))))))..)))..-----------........ ( -24.80)
>DroSim_CAF1 10986 99 - 1
UUUUCUCA-----GCUGGAAGCCGCCAGAAGACAAUUGUUCAUUUCCACGCCGAAAUGAAUGGAAAUA-----UAAAAGUUUCCGUUAGAGCAAAAGUCGC-----------CGACAAUA
........-----.((((......))))..(((..(((((((((((......))))).(((((((((.-----.....))))))))).))))))..)))..-----------........ ( -24.60)
>DroEre_CAF1 12387 99 - 1
UUUUCUCA-----GCUGGAAACCCCCAGAAGACAAUUGUUCAUUUCCACGCCGAAAUGAAUGGAAAUA-----UAAAAGUUUCCGUUAGAGCAAGACUUGC-----------CGACAACA
(((((((.-----.((((......))))..(((....(((((((((......)))))))))((((((.-----.....))))))))).))).)))).....-----------........ ( -23.20)
>DroAna_CAF1 11701 115 - 1
UAUACCCAAAAGUGCCAGAAACCGUUAGUAAACAAUUGCU-AUUUCCACACAGAAAUGG----GUAUAUUCGUUAAAAGUUUCCGCCAGAAAAACUGCAGCCCCAUGGAAAUCAACAAUA
((((((((...(((...((((....((((((....)))))-)))))..))).....)))----)))))...(((....(((((((((((.....)))..)).....)))))).))).... ( -20.40)
>consensus
UUUUCUCA_____GCUGGAAACCCCCAGAAGACAAUUGUUCAUUUCCACGCCGAAAUGAAUGGAAAUA_____UAAAAGUUUCCGUUAGAGCAAAAGUCGC___________CGACAAUA
..............((((......))))..(((..(((((((((((......))))).(((((((((...........))))))))).))))))..)))..................... (-13.84 = -15.16 +   1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:13 2006