Locus 6143

Sequence ID 3L_DroMel_CAF1
Location 16,260,946 – 16,261,044
Length 98
Max. P 0.900759
window9870

overview

Window 0

Location 16,260,946 – 16,261,044
Length 98
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 69.96
Mean single sequence MFE -34.56
Consensus MFE -14.62
Energy contribution -17.19
Covariance contribution 2.57
Combinations/Pair 1.15
Mean z-score -1.96
Structure conservation index 0.42
SVM decision value 1.02
SVM RNA-class probability 0.900759
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16260946 98 - 23771897
GGUGGUUCUCCAUGAAAAUCUUGGGGAUUCGGUGGCUAAAAUUGGCGGUGGCUCAGUGGC--UCAAGCCA--AAGCCGCCGCGUGACUGAUCUCUUUCGCGA
.((((.((((((.(.....).)))))).(((((.((........(((((((((...((((--....))))--.))))))))))).)))))......)))).. ( -40.20)
>DroVir_CAF1 12247 82 - 1
ACAGAUUUUUCU--------------AGUCUGUGUCUGUGUUUGUCUCUGGCUAAA------UCGAGGCAACAAGGUGGCGCGUGACUGAUUUCUGUGGCGC
(((((....((.--------------((((((((((..((((.(((((........------..)))))))))....)))))).))))))..)))))..... ( -26.00)
>DroSec_CAF1 12392 100 - 1
GGUGGUUCUCCAUGAAAAUCUUGGGGAUUCGGUGGCUGAAAUUGGCGGUGGCUCAGUGGCACUCAAGCCA--AAGCCGCCGCUUGACUGAUCUCUUUCGCGA
.((((.((((((.(.....).)))))).(((((.(........((((((((((...((((......))))--.))))))))))).)))))......)))).. ( -38.80)
>DroSim_CAF1 10852 98 - 1
GGUGGUUCUGCAUGAAAAUCUUGGGGAUUCGGUGGCUCAACUUGGCGGUGGCUCAGUGGC--UCAAGCCA--AAGCCGCCGCUUGACUGAUCUCUUUCGCGA
.(((((((.....)))......((((((.((((.(........((((((((((...((((--....))))--.))))))))))).)))))))))).)))).. ( -36.80)
>DroEre_CAF1 12272 80 - 1
GGUGGUUCUCCAUGGAAAUCUCGGGGAUUCGGUGGCUCACAUCU--------------------GAGCCA--AAACCGCCGCGUGACUGAUCUCUUUCGCGA
(((((((((((..((....)).))))).....(((((((....)--------------------))))))--..)))))).(((((..(....)..))))). ( -31.00)
>consensus
GGUGGUUCUCCAUGAAAAUCUUGGGGAUUCGGUGGCUCAAAUUGGCGGUGGCUCAGUGGC__UCAAGCCA__AAGCCGCCGCGUGACUGAUCUCUUUCGCGA
...((.((((((.(.....).)))))).))(((((((.....((((....................))))...))))))).(((((..(....)..))))). (-14.62 = -17.19 +   2.57)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:12 2006