| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,257,934 – 16,258,045 |
| Length | 111 |
| Max. P | 0.583354 |
| Location | 16,257,934 – 16,258,045 |
|---|---|
| Length | 111 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 70.22 |
| Mean single sequence MFE | -28.50 |
| Consensus MFE | -10.88 |
| Energy contribution | -11.64 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.583354 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16257934 111 - 23771897 GACCUUGGAAGUCCUUGCACCGAGUUCAACGACUGACCUCACUGCGUAUAAGCAAGA------AGGAGCUUUAUCGCAUUGUAUAAAUAA--UAUGGUGGGGCAACAUUGAAAU-UCAAA ....(((((..(((((.....(((.(((.....))).)))..(((......)))..)------))))(((((((((.(((((....))))--).)))))))))..........)-)))). ( -26.20) >DroSec_CAF1 9364 96 - 1 GGCCAUGGAUGUCCUUGCAGCGAGUUCAACGACUGACCUCGCUGCGUAUAAGCAAUA------AGGC---------------AUAAUAAA--UAUGGUGGGGCAACAUUGAAAU-UCAAA .((((((.(((.((((((((((((.(((.....))).))))))))((....))...)------))))---------------))......--))))))..(....).(((....-.))). ( -30.00) >DroSim_CAF1 7838 96 - 1 GGCCAUGGAAGUCCUUGCAGCGAGUUCAACGACUGACCUCGCUGCGUAUAAGCAAUA------AGGA---------------AUAAUAAA--UAUGGUGGGGCAACAUUGAAAU-UCAAA .((((((....(((((((((((((.(((.....))).))))))))((....))...)------))))---------------........--))))))..(....).(((....-.))). ( -29.60) >DroEre_CAF1 9260 111 - 1 UGUCAUGGAAGUCCUUGCACUGAGUUCAUCGACUGACCUCACUGCGUAUCAGCACUG------AGGAGGGAUAUCAACUUGAAUAAACAU--AAUGAGGGGGCCACAUUGAAAU-UCAAA .......((.((((((......((((....))))..(((((.(((......))).))------))))))))).))...((((((.....(--((((.((...)).)))))..))-)))). ( -26.00) >DroAna_CAF1 7963 108 - 1 GGCU-----UGUCCUUGC--CGAGUUCGUUGACUGCCCACUCUGCGUAUGAGCAAUGUGCCGGAGGAGG---AUAAAAGUCUAAAAAUAUCAAAUGAUA--GUUUCAUUGAUAUUUCAAU ((((-----(((((((.(--((((((....))))...(((..(((......)))..))).)))..))))---)))..))))...(((((((((.(((..--...)))))))))))).... ( -30.70) >consensus GGCCAUGGAAGUCCUUGCACCGAGUUCAACGACUGACCUCACUGCGUAUAAGCAAUA______AGGAG____AU_____U__AUAAAAAA__UAUGGUGGGGCAACAUUGAAAU_UCAAA ..........(((((.(((.((((.(((.....))).)))).)))((....)).............................................)))))....((((....)))). (-10.88 = -11.64 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:09 2006