Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,782,676 – 1,782,916 |
Length | 240 |
Max. P | 0.728661 |
Location | 1,782,676 – 1,782,796 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -38.40 |
Consensus MFE | -23.26 |
Energy contribution | -23.10 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.29 |
Mean z-score | -1.81 |
Structure conservation index | 0.61 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612155 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1782676 120 + 23771897 CAAGAUGCACCUCAGCGCGGAUAUUUCCAGCGCCCUUCAGCAGAUCGAGGCAGUGAAGAAGGGCAUCGAUGAGUCCGACGACCCCAAGCUGCAAAUGCAGACGGCCGAGAGCCUUAGCAC ...(((((.(((..(((((((....))).)))).(((((((........))..))))).)))))))).....(((....))).....(((((....)))).)(((.....)))....... ( -35.70) >DroVir_CAF1 3692 119 + 1 -AAAAUGCACCUGAGCGCCGAUAUUUCCAGUGCCUUGCAGCAAAUCGAAGCUGUGAAAAAGGGCAUCGACGAGUCCGAGGAUGUGAAGCUGCAAUUGCAAACGGCGGACAGUUUAAAUAC -.........(((..(((((..........(((.(((((((...((((.(((.(.....).))).))))((.(((....))).))..)))))))..)))..)))))..)))......... ( -34.50) >DroPse_CAF1 4163 120 + 1 GACCAUGCAUCUGAGUGCAGACAUUUCUAGCGCUUUGCAGCAAAUCGAGGCCGUCAAAAAGGGCAUCGACGAGAGCGAUGACCCCAAACUGCAAAUGCAGACGGCGGAGAGCCUGAGCAC .....((((...(((((((((....))).))))))))))((........((((((.....((((((((.(....)))))).))).....(((....)))))))))((....))...)).. ( -43.40) >DroGri_CAF1 3278 119 + 1 -AAAAUGCAUUUGAGUGCGGAUCUGUCAAGUGCGUUGCAGCAAAUCGAGGCCGUGAAGAAGGGCAUCGAUGAGUCGGAGGAUGUCAAGCUGCAAAUGCAAACGGCGGACAGUUUGAAUAC -....(((((....)))))..((((((...(((((((((((..(((((.(((.(.....).))).)))))(((((....))).))..))))).))))))...))))))............ ( -40.20) >DroMoj_CAF1 3144 120 + 1 CAAAAUGCACCUGAGUGCCGAUAUUUCCAGUGCCCUACAGCAAAUCGAGGCUGUGAAAAAGGGCAUUGACGAAUCGGAAGAUGCCAAGCUGCAAAUGCAAACGGCGGAUAGUUUAAAUAC ..........(((..(((((.......((((((((((((((........))))).....)))))))))..(.(((....)))..)....(((....)))..)))))..)))......... ( -35.10) >DroPer_CAF1 4601 120 + 1 GACCAUGCAUCUGAGUGCAGACAUUUCCAGCGCUUUGCAGCAAAUCGAGGCCGUCAAAAAGGGCAUCGACGAGAGCGAUGACCCCAAACUGCAAAUGCAGACGGCGGAGAGCCUGAACAC ...((.((.((((....))))..(((((...(((....)))........((((((.....((((((((.(....)))))).))).....(((....)))))))))))))))).))..... ( -41.50) >consensus _AAAAUGCACCUGAGUGCAGAUAUUUCCAGCGCCUUGCAGCAAAUCGAGGCCGUGAAAAAGGGCAUCGACGAGUCCGAGGACCCCAAGCUGCAAAUGCAAACGGCGGAGAGCCUGAACAC .....((((.....((((...........))))..((((((...((((.(((.(.....).))).))))...(((....))).....))))))..))))...(((.....)))....... (-23.26 = -23.10 + -0.16)
Location | 1,782,796 – 1,782,916 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.39 |
Mean single sequence MFE | -39.70 |
Consensus MFE | -20.61 |
Energy contribution | -21.51 |
Covariance contribution | 0.89 |
Combinations/Pair | 1.25 |
Mean z-score | -2.17 |
Structure conservation index | 0.52 |
SVM decision value | 0.42 |
SVM RNA-class probability | 0.728661 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1782796 120 + 23771897 CAUUCUGGGCAUUCUGCAGGAUCCCGUUUUCCGCACCAUCGUCCACGUGCAGGACUCGUUGUCCGAGCUGAACGCCCAGCUGGCUCAGCAUCCGUCCAUGUUGCCCAACGACUUCGACAU .....(((((.(((.((.((((..((...(((((((..........)))).)))..))..))))..)).))).)))))((((...))))....(((...((((.....))))...))).. ( -39.20) >DroVir_CAF1 3811 120 + 1 UAUACUGGGCAUACUGACAGAUCCGGUUUUCCGUACCAUUGCCCAUGUGCAGGAGUCGCUGUACGAGCUGGGCAUACAGCUGGGCCAGCAUCCGUCCAUGUUGCCCAACGACUUUGACAU .....((((((.((.(((.(((.((((.......)))...((((.(((((((......)))))))(((((......)))))))))..).))).)))...))))))))............. ( -41.30) >DroGri_CAF1 3397 120 + 1 GAUACUGGGCAUAUUAACGGAUCCGGUCUUUCGCACAAUUGCCCAUGUGCAGGAGUCGCUCUAUGAGCUGGGCAUCCAGCUCGGCCAACAUCCGUCCAUGCUGCCUAAUGACUUUGACAU .....(((((((((..((((((..((((....(((((........))))).((((...))))..(((((((....)))))))))))...))))))..))).))))))............. ( -42.50) >DroMoj_CAF1 3264 120 + 1 GAUAAUGGGUAUAUUAACGGAUCCCGUUUUUCGUACCAUUGCCCAUGUUCAGGAGUCAUUGUACGAGCUGGGCAUACAGCUUGGCCAACAUCCGUCCAUGUUGCCGAACGACUUCGACAU ((..(((((((.....(((((........))))).....)))))))..)).((((((.......((((((......))))))(((.(((((......))))))))....))))))..... ( -39.70) >DroAna_CAF1 3660 120 + 1 CAUCCUGGGCAUUCUGCAGGACCCCGUCUUUCGCACCAUCGUCCAUGUGCAAGACUCACUGUCUGAACUUAAUGCCCAACUGGGCCAGCACCCGUCCAUGCUGCCCAACGACUUCGAUAU .....((((((((..(..((((...(((((..((((..........))))))))).....))))...)..))))))))..(((((.((((........))))))))).((....)).... ( -36.90) >DroPer_CAF1 4721 120 + 1 CAUUCUGGGAAUCCUGCAAGACCCCGUCUUCCGCACUAUUGUCCAUGUGCAGGACUCUCUCUCCGAGCUGAAUGCCCAGCUGGGCCAGCAUCCGUCCAUGCUGCCCAAUGAUUUCGAUAU ......((((.(((((((((((...))))...(.((....)).)...))))))).))))....(((((((......))))(((((.(((((......))))))))))......))).... ( -38.60) >consensus CAUACUGGGCAUACUGAAGGAUCCCGUCUUCCGCACCAUUGCCCAUGUGCAGGACUCGCUGUACGAGCUGAACACCCAGCUGGGCCAGCAUCCGUCCAUGCUGCCCAACGACUUCGACAU .....((((((.......(((........))).......))))))......(((.((........(((((......)))))(((.((((((......)))))))))...)).)))..... (-20.61 = -21.51 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:48 2006