Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,255,312 – 16,255,406 |
Length | 94 |
Max. P | 0.771156 |
Location | 16,255,312 – 16,255,406 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 91.70 |
Mean single sequence MFE | -20.44 |
Consensus MFE | -19.47 |
Energy contribution | -19.42 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.18 |
Mean z-score | -1.07 |
Structure conservation index | 0.95 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.771156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16255312 94 - 23771897 AAUGUUGUUAUGUUUCGUAUUAUACGCGACUGGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA ...((((((((((((((..((...((((..(((.....)))))))...))..))))))))))))))....(((((..(((....)))..))))) ( -22.70) >DroSec_CAF1 6755 94 - 1 AAUGUUGUUAUGCUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA ...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -24.92) >DroSim_CAF1 5207 94 - 1 AAUGUUGUUAUGCUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA ...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -24.92) >DroEre_CAF1 6657 94 - 1 AAUGUUGUUAUGUUUUGUAUUAUACGCGGCUCGUGAAUUUAUGCGAAGAACGCGAGGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA ...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) ( -21.12) >DroYak_CAF1 8566 94 - 1 AAUGUUGUUAUGUUUUGUAUUAUACGCGACUCGUGAAAUUAUACGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCUAUAA ...((((((((((((((((...)))(((..(((((......)))))....))))))))))))))))....(((((..(((....)))..))))) ( -17.90) >DroAna_CAF1 5318 93 - 1 AAUGUUGUUAUGUUUUGUAUUAUCCGCGACUCA-AAAUUUAUGCGAAGAACGCGCAGCUUAUCGAUUUAAUUAUGCUUAUACUGAAGCCCAUAA ...(((((..((..((((.......))))..))-........(((.....))))))))................((((......))))...... ( -11.10) >consensus AAUGUUGUUAUGUUUCGUAUUAUACGCGACUCGUGAAUUUAUGCGAAGAACGCGAAGCGUAGCGAUUAAAUUAUGCUUAUGUCAAUACCCAUAA ...((((((((((((((..((...((((.............))))...))..))))))))))))))....(((((..(((....)))..))))) (-19.47 = -19.42 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:03 2006