Locus 6136

Sequence ID 3L_DroMel_CAF1
Location 16,247,859 – 16,247,950
Length 91
Max. P 0.541880
window9857

overview

Window 7

Location 16,247,859 – 16,247,950
Length 91
Sequences 4
Columns 98
Reading direction forward
Mean pairwise identity 85.19
Mean single sequence MFE -20.45
Consensus MFE -13.46
Energy contribution -13.90
Covariance contribution 0.44
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.66
SVM decision value 0.02
SVM RNA-class probability 0.541880
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16247859 91 + 23771897
UGUGCCUAUGAUUUUAUCAACCGCAGUUACAUUCUCUGGGAUUUCUAUUUUUGGAAAUAAUUGGUAAGAAUGUGCGGGAAUACUGAAUAUA-------
.(((....((((...)))).((((....((((((((..(.(((((((....)))))))..)..)..)))))))))))...)))........------- ( -18.60)
>DroSec_CAF1 21311 91 + 1
UAUGCCUAUGAUUUUAUCAACAGCAGUUACAUUCUCUGGGAUUUCUAUUUUUGGAAAUAAUCGGUAAGAAUGUGUGGGAAUACUGCAUAUA-------
......................(((((((((((((((((.(((((((....)))))))..))))..)))))))).......))))).....------- ( -20.31)
>DroEre_CAF1 21076 91 + 1
CGUGCCUAUGAUUUUAUCAUCCGUACUUACAUUCACUGGUAUUUCUAUUUUUGGAAAUAAUUGGUAAGAAUGUGAGGGGAUAUUCCAUAUA-------
..................((((...(((((((((((..(((((((((....))))))).))..))..))))))))).))))..........------- ( -24.00)
>DroYak_CAF1 26556 97 + 1
UGUGCCUAUGAUUUUAUCAUCCGCAGUUACAUUCUCUGGGAUUUCUAUUUUUGGAAAUAAUUGCUAAGAAUGUAUGGAUAUAUAC-AUAUAUAUGGAA
..(((..(((((...)))))..)))..((((((((.(((.(((((((....))))))).....)))))))))))...((((((..-..)))))).... ( -18.90)
>consensus
UGUGCCUAUGAUUUUAUCAACCGCAGUUACAUUCUCUGGGAUUUCUAUUUUUGGAAAUAAUUGGUAAGAAUGUGUGGGAAUACUCCAUAUA_______
..(((..(((((...)))))..)))..(((((((((((..(((((((....)))))))...)))..))))))))........................ (-13.46 = -13.90 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:11:00 2006