Locus 6135

Sequence ID 3L_DroMel_CAF1
Location 16,246,204 – 16,246,310
Length 106
Max. P 0.845087
window9856

overview

Window 6

Location 16,246,204 – 16,246,310
Length 106
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 75.44
Mean single sequence MFE -23.17
Consensus MFE -13.82
Energy contribution -13.45
Covariance contribution -0.37
Combinations/Pair 1.32
Mean z-score -1.92
Structure conservation index 0.60
SVM decision value 0.77
SVM RNA-class probability 0.845087
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16246204 106 + 23771897
----------A--AAUAUAGAAACCGUUUAUAUGGUUUUAGAAGGUAUUAU--AUAUUAUCCGCUAAUGAUGUUCGACUUUUAAGAGCAGUAUUAAUUUGAAAUAUGAUUUUGGAUGGUA
----------.--(((((.((((((((....)))))))).....)))))..--.(((((((((..(((.((((((((...((((........)))).))).))))).))).))))))))) ( -20.20)
>DroSim_CAF1 19713 104 + 1
--------------AUUUAUAAGCCGCUUAUAUGGUUUUAUAAGCUAUUAU--AUAAUAUCCGCUAAUGGUGUUCGAUUUUUAAGAGCAGUAUUAUUUUAAAUUUUGAUUUUGGAUGGUA
--------------........((((((((((......)))))))......--.....((((..(((((.(((((.........))))).)))))....((((....)))).))))))). ( -20.90)
>DroEre_CAF1 19432 110 + 1
-----CUUUAA--UUUAUAGAAACCAUUCACAUGGUUUUAUA-GGCAUCAU--AUAUUAGCCGCUAAUGGUGUUCGACUUUUAAGAGCAUUAUUAAUUUGAAAUAUGAUUUUGGGUGGUA
-----......--.........((((((((((((.(((((..-(((.....--......)))..(((((((((((.........)))))))))))...)))))))))....)))))))). ( -24.60)
>DroYak_CAF1 24895 119 + 1
UUGUUCUUACAUUUUUAUAGAAACCGUUCAUAUGGUUUUAUAAGGUAUUAUUAUUAUUAACCGCUAAUGGCGGUUCUUUUUUUAGAGCGUUAUUAAU-UGUAAUAUGAUUUUUAGUGGUA
......((((...(((((((((.((((....)))))))))))))(((((((.((((.(((((((.....)))(((((......))))))))).))))-.)))))))........)))).. ( -27.00)
>consensus
__________A__UAUAUAGAAACCGUUCAUAUGGUUUUAUAAGGUAUUAU__AUAUUAUCCGCUAAUGGUGUUCGACUUUUAAGAGCAGUAUUAAUUUGAAAUAUGAUUUUGGAUGGUA
...................((((((((....))))))))......((((....(((((......(((((((((((.........)))))))))))......))))).......))))... (-13.82 = -13.45 +  -0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:59 2006