| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,243,910 – 16,244,013 |
| Length | 103 |
| Max. P | 0.604065 |
| Location | 16,243,910 – 16,244,013 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 73.36 |
| Mean single sequence MFE | -36.27 |
| Consensus MFE | -15.22 |
| Energy contribution | -14.94 |
| Covariance contribution | -0.27 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.42 |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.604065 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16243910 103 - 23771897 CGGAGGCUACGGCCAUGGACUGUACGGAGGACACGGUCUGGGUCUGGGUCUGGGUCUGGGAUACGGACUGGGAUAUGGCUAUGGCCACGGUUGGUAGAGGUAC----- ((..(((((..((((((((((((.........)))))))..((((.((((((..((...))..)))))).)))))))))..))))).))..............----- ( -40.30) >DroGri_CAF1 43748 87 - 1 GGGCGGCUAUGGUCACGGUCUCUAUG---GGCAUGGUCUAGGCC------------UGGGACUGGGUCUGGGCUAUGGCUAUGGACAUGGCUGGUAAGCAAA------ ..(((((....))).(((((((((((---(.(((((((((((((------------(......)))))))))))))).)))))))...)))))....))...------ ( -42.20) >DroEre_CAF1 17408 91 - 1 CGGAGGCUACGGUCAUGGACUGUACGGCGGACACGGUCUGGGUC------------UCGGAUACGGACUGGGAUAUGGCUAUGGCCAUGGUUGGUAGAGGUGC----- ....(((((.((((((((.((((....((....))((((.((((------------.((....)))))).)))))))))))))))).)))))...........----- ( -30.70) >DroYak_CAF1 22644 91 - 1 CGGAGGCUACGGUCAUGGACUAUACGGAGGACACGGUCUGGGUC------------UGGGAUACGGACUGGGAUAUGGCUAUGGCCAUGGUUGGUAAAGGUGC----- ....(((((.((((((((.((((.((.......))((((.((((------------((.....)))))).)))))))))))))))).)))))...........----- ( -33.30) >DroMoj_CAF1 46028 93 - 1 GGGCGGCUACGGUCACGGACUCUACG---GACAUGGACUGGGUC------UGGGCUUGGGCCUGGGUCUGGGCUAUGGCCAUGGCUACGGCUGGUGAGCACA------ ..(((((((..(((.(((((((..((---(((.........)))------))(((....))).))))))))))..)))))..(((....))).....))...------ ( -40.50) >DroAna_CAF1 44595 93 - 1 GGGAGGCUAUGGACACGGUCUUUACG---GACAUGGUCUGGGUC------------UGGGAUAUGGUCUGGGCUAUGGCUAUGGUCAUGGCUGGUAGAGAAGCAAUGU .....(((.((....)).(((((((.---..(((((((..(..(------------........)..)..)))))))(((((....)))))..))))))))))..... ( -30.60) >consensus CGGAGGCUACGGUCACGGACUCUACG___GACACGGUCUGGGUC____________UGGGAUACGGACUGGGAUAUGGCUAUGGCCAUGGCUGGUAAAGAUAC_____ ....(((((.(((((((.......)).......(((((((.(((...............))).))))))).....))))).)))))...................... (-15.22 = -14.94 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:58 2006