| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,230,807 – 16,230,909 |
| Length | 102 |
| Max. P | 0.799866 |
| Location | 16,230,807 – 16,230,909 |
|---|---|
| Length | 102 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.85 |
| Mean single sequence MFE | -28.68 |
| Consensus MFE | -17.61 |
| Energy contribution | -16.56 |
| Covariance contribution | -1.05 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.61 |
| SVM decision value | 0.61 |
| SVM RNA-class probability | 0.799866 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16230807 102 + 23771897 GGUUUACAGCCGGGAAUACCACGGAAAUUUUGCGGCUCCCUACGUGGCA---UCUCCCUAUGUGGCUUCUCCCUACGUGGCUUCUCCCUACGUCGCUUCCCCUUA (((.....)))(((((..(((((((.((.(..((........))..).)---).)))....)))).........((((((.......))))))...))))).... ( -25.00) >DroPse_CAF1 34167 83 + 1 -GUCUACAGCCGGGAAUAUCACGGCAACUUUGCGGCACCCUACGUCGCC---UCUCCCUAUGUGGCAUCGUCCGAUGUGGCAUCAC---------------C--- -.......(((((((.......(....)...(((((.......))))).---..))))......(((((....)))))))).....---------------.--- ( -24.10) >DroSec_CAF1 4328 102 + 1 GGUUUACAGCCGGGAGUACCACGGAAACUUCGCGGCUCCCUACGUGGCA---UCUCCCUAUGUGGCUUCCCCCUACGUGGCUUCUCCCUACGUGGCGUCUCCCUA (((.....)))(((((..(((((((....(((((........)))))..---..)))((((((((.......))))))))...........))))...))))).. ( -32.90) >DroEre_CAF1 4401 87 + 1 GGUCUACAGCCGGGAGUACCACGGAAACUUCGCGGCUCCCUACGUGGCG---UCUCCCUACGUGGCUUCUCCCUACGUGGCCUCUC---------------CCUA (((.....)))(((((..(((((((.((.(((((........))))).)---).)))....((((.......))))))))...)))---------------)).. ( -31.00) >DroAna_CAF1 31377 89 + 1 -GUCUACACCCGGGAGUACCACGGCAACUUCGCAGCUCCCUACGUGGCAGCCUCUCCCUACGUGGCCUCCCCCUACGUGGCAUCUC---------------CCUA -..........(((((..(((((((......))......((((((((..........))))))))..........)))))...)))---------------)).. ( -27.30) >DroPer_CAF1 34329 83 + 1 -GUCUACAGCCGGGAAUAUCCCGGCAACUCUGCGACUCCCUAUGUCGCC---UCUCCCUAUGUGGCAUCGUCCGAUGUGGCAUCAC---------------C--- -.......((((((.....))))))......(((((.......))))).---.......((((.(((((....))))).))))...---------------.--- ( -31.80) >consensus _GUCUACAGCCGGGAAUACCACGGAAACUUCGCGGCUCCCUACGUGGCA___UCUCCCUAUGUGGCUUCCCCCUACGUGGCAUCUC_______________CCUA ........(((((((...((.(((.....))).)).)))).((((((.........((.....)).......)))))))))........................ (-17.61 = -16.56 + -1.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:57 2006