Locus 6131

Sequence ID 3L_DroMel_CAF1
Location 16,226,662 – 16,226,761
Length 99
Max. P 0.500000
window9852

overview

Window 2

Location 16,226,662 – 16,226,761
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 79.36
Mean single sequence MFE -31.59
Consensus MFE -18.69
Energy contribution -19.25
Covariance contribution 0.56
Combinations/Pair 1.27
Mean z-score -1.52
Structure conservation index 0.59
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16226662 99 - 23771897
CAGCUGAUCUUUGCCUGUUUGCUUGCUCUGGCUUUGGGGCACGAGGUGUAU---UACUAUACCCCCAGCUAUGGGUACUACCCCAGUACCUUUGCCAGGUCC
............(((((.......((...((..((((((.....((((((.---...))))))((((....)))).....))))))..))...))))))).. ( -29.41)
>DroPse_CAF1 29290 102 - 1
UAGCUGAUUUUUGCCUGUCUGCUGGGUCUGGCCCUCGGCCACGAGGUCUACACCUACUAUACCCCAUCGUACGGGUACUACCCGUCGACCUAUGCCCGGGCU
............(((((...(((((((.(((.(((((....))))).))).)))))..........(((.(((((.....)))))))).....)).))))). ( -36.60)
>DroEre_CAF1 148 99 - 1
CAGCUGAUCUUUGCCUGUUUGCUUGCCCUGGCUUUAGGGCACGAGGUGUAU---UACUAUACCCCUAGCUAUGGGUACUAUCCCAGUACCUUUGCCAGGUCC
............(((((......(((((((....)))))))..(((.((((---....)))).))).((...(((((((.....)))))))..))))))).. ( -31.50)
>DroYak_CAF1 5293 99 - 1
CAGCUGAUCUUUGCCUGUUUGCUUGCCCUGGCUUUGGGCCAAGAAAUGUAU---UACUAUACCCCUAGCUAUGGGUACUACCCCAGUACUUUUGCCAGGACC
.......((((.(((((...(((......)))..))))).))))...((((---....)))).(((.((...(((((((.....)))))))..)).)))... ( -25.90)
>DroAna_CAF1 26818 102 - 1
CAGCUAAUUUUCGCCUGCUUGCUGGGUCUGGCUUUGGGCCAUGAUGUGUACACCUACUACACCCCGACCUAUGGGUACUAUCCGGCUGCCUAUGCCAGGACC
((((................))))((((((((..(((((...((((.((((.((..................)))))))))).....))))).)))).)))) ( -29.56)
>DroPer_CAF1 29462 102 - 1
UAGCUGAUUUUUGCCUGUCUGCUGGGUCUGGCCCUCGGCCACGAGGUCUACACCUACUACACCCCAUCGUACGGGUACUACCCGUCGACCUAUGCCCGGGCU
............(((((...(((((((.(((.(((((....))))).))).)))))..........(((.(((((.....)))))))).....)).))))). ( -36.60)
>consensus
CAGCUGAUCUUUGCCUGUUUGCUGGCUCUGGCUUUGGGCCACGAGGUGUAC___UACUAUACCCCAACCUAUGGGUACUACCCCACUACCUAUGCCAGGACC
.(((.(((........))).))).(.((((((...(((....(.((((((.......)))))).).......(((.....))).....)))..)))))).). (-18.69 = -19.25 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:55 2006