Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,781,971 – 1,782,063 |
Length | 92 |
Max. P | 0.910221 |
Location | 1,781,971 – 1,782,063 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -26.54 |
Consensus MFE | -10.57 |
Energy contribution | -10.33 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.31 |
Mean z-score | -2.37 |
Structure conservation index | 0.40 |
SVM decision value | 1.07 |
SVM RNA-class probability | 0.910221 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1781971 92 + 23771897 CAUAUGAAGCAUAUCACUCGCGAAUUCUUCCGCGAAUUCCGCAAGCUCGAAAUAGAAUUGGAGGAGGAGGAGGAACGUAACAUGGUUUGAUG .........((.((((...(((..((((((((((.....)))...(((.((......)).)))..)))))))...)))....)))).))... ( -21.00) >DroPse_CAF1 2748 92 + 1 ACAAUGAAAAGCAUGACGCGUGAGUUCUUCCGCGAGUUCCACAAGUUGGAAGUGGAACUCGAGGAGGAGGAAAAACAGAAAAUGCUUUAGUA .......(((((((...((....))((((((.((((((((((.........)))))))))).)))))).............))))))).... ( -35.40) >DroGri_CAF1 2685 91 + 1 GGCAUGAAAGCCAUGACACGUGAAUUCUUCGGCGAAUUCCGCAAGUCGGAGCUGGAAUUGGAGCGGGAGGAGAAGAAACAAAUGCAGUAAA- (((......))).......((...((((((.((.((((((((........)).))))))...)).))))))......))............- ( -22.30) >DroSim_CAF1 2751 92 + 1 CAUAUGAAGCAUAUCACUCGCGAAUUCUUCCGCGAAUUCCGCAAGCUCGAAAUAGAGCUGGAGGAGGAGGAGGAACGUAACAUGGUUUGAUG ..(((.((((...((.(((.(...((((((((((.....))).(((((......))))))))))))..)))))).(((...))))))).))) ( -27.00) >DroYak_CAF1 2697 92 + 1 AAUAUGAAGCAUAUCACACGCCAAUUUUUCCGCGAAUUCCGCAAGCUCGAAGUCGAACUGGAGGAGGAGGAAGAACGUAACAUGGUUUGAUG ..(((.((((.......(((....(((((((.....((((...((.(((....))).))...))))..))))))))))......)))).))) ( -19.22) >DroPer_CAF1 3204 92 + 1 ACAAUGAAAAGCAUGACGCGUGAGUUCUUCCGCGAGUUCCACAAGUUGGAAGUGGAACUCGAAGAGGAGGAAAAACAGAAGAUGCUUUAGAA .......(((((((...((....))((((((.((((((((((.........))))))))))....))))))..........))))))).... ( -34.30) >consensus AAUAUGAAACACAUCACACGCGAAUUCUUCCGCGAAUUCCGCAAGCUCGAAGUGGAACUGGAGGAGGAGGAAAAACAUAACAUGCUUUAAUG ........................(((((((.(.(((((...............))))).)....))))))).................... (-10.57 = -10.33 + -0.25)
Location | 1,781,971 – 1,782,063 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 74.86 |
Mean single sequence MFE | -24.35 |
Consensus MFE | -6.21 |
Energy contribution | -6.49 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.33 |
Mean z-score | -2.90 |
Structure conservation index | 0.25 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.900655 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1781971 92 - 23771897 CAUCAAACCAUGUUACGUUCCUCCUCCUCCUCCAAUUCUAUUUCGAGCUUGCGGAAUUCGCGGAAGAAUUCGCGAGUGAUAUGCUUCAUAUG ........(((((((((((((.(...(((...............)))...).)))))(((((((....)))))))))))))))......... ( -21.06) >DroPse_CAF1 2748 92 - 1 UACUAAAGCAUUUUCUGUUUUUCCUCCUCCUCGAGUUCCACUUCCAACUUGUGGAACUCGCGGAAGAACUCACGCGUCAUGCUUUUCAUUGU ....(((((((....(((......((.(((.((((((((((.........)))))))))).))).))......)))..)))))))....... ( -28.30) >DroGri_CAF1 2685 91 - 1 -UUUACUGCAUUUGUUUCUUCUCCUCCCGCUCCAAUUCCAGCUCCGACUUGCGGAAUUCGCCGAAGAAUUCACGUGUCAUGGCUUUCAUGCC -......((((.((.((((((.......(((........)))((((.....)))).......))))))..)).))))...(((......))) ( -18.80) >DroSim_CAF1 2751 92 - 1 CAUCAAACCAUGUUACGUUCCUCCUCCUCCUCCAGCUCUAUUUCGAGCUUGCGGAAUUCGCGGAAGAAUUCGCGAGUGAUAUGCUUCAUAUG ........((((((((...........(((.(.(((((......))))).).)))..(((((((....)))))))))))))))......... ( -27.70) >DroYak_CAF1 2697 92 - 1 CAUCAAACCAUGUUACGUUCUUCCUCCUCCUCCAGUUCGACUUCGAGCUUGCGGAAUUCGCGGAAAAAUUGGCGUGUGAUAUGCUUCAUAUU ........(((((((((..........(((.(.((((((....)))))).).)))...(((.((....)).))))))))))))......... ( -22.90) >DroPer_CAF1 3204 92 - 1 UUCUAAAGCAUCUUCUGUUUUUCCUCCUCUUCGAGUUCCACUUCCAACUUGUGGAACUCGCGGAAGAACUCACGCGUCAUGCUUUUCAUUGU ....(((((((.....((((((((.......((((((((((.........)))))))))).)))))))).........)))))))....... ( -27.34) >consensus CAUCAAACCAUGUUACGUUCCUCCUCCUCCUCCAGUUCCACUUCCAACUUGCGGAAUUCGCGGAAGAAUUCACGAGUCAUAUGCUUCAUAUU ........................((.(((.(.((((((.............)))))).).))).))......................... ( -6.21 = -6.49 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:45 2006