Locus 6128

Sequence ID 3L_DroMel_CAF1
Location 16,223,669 – 16,223,789
Length 120
Max. P 0.738560
window9843

overview

Window 3

Location 16,223,669 – 16,223,789
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.67
Mean single sequence MFE -41.75
Consensus MFE -36.71
Energy contribution -37.77
Covariance contribution 1.06
Combinations/Pair 1.02
Mean z-score -1.96
Structure conservation index 0.88
SVM decision value 0.44
SVM RNA-class probability 0.738560
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16223669 120 - 23771897
CUCGGCGGUGUAUCAAUUAUUUAUAGAUGUUGUAUCUUCAGGGGGCCCUGCAUAACCGAAAUGCGUUUGCAAAACGUGCAGGCGCAGCUUGAGUCUCCGGCAGAUGCAACCUGUUGGGUU
((((((((...(((.((.....)).)))(((((((((.(.(((((((..((..........((((((((((.....))))))))))))..).)))))).).))))))))))))))))).. ( -42.80)
>DroSec_CAF1 42456 120 - 1
CUCGGCGGUGUAUCAAUUAUUUAUAGAUGUUGUAUCUUCAGGGGGCCCUGCAUAACCGAAAUGCGUUUGCAAAACGUGCAGGCGCAGCUUGAGUCUCCGGCAGAUGCAACCUGUUGUGUU
(.((((((...(((.((.....)).)))(((((((((.(.(((((((..((..........((((((((((.....))))))))))))..).)))))).).))))))))))))))).).. ( -39.50)
>DroSim_CAF1 44107 120 - 1
CUCGGCGGUGUAUCAAUUAUUUAUAGAUGUUGUAUCUUCAGGGGGCCGUGCAUAACCGAAAUGCGUUUGCAAAACGUGCAGGCGCAGCUUGAGUCUCCGGCAGAUGCAACCUGUUGGGUU
((((((((...(((.((.....)).)))(((((((((.(.((((((.((.....))(((..((((((((((.....))))))))))..))).)))))).).))))))))))))))))).. ( -44.00)
>DroEre_CAF1 42298 117 - 1
CUCGGCGGUGUAUCAAUUAUUUAUAGAU---GUAUCUUCAGGGAGCGCUGCAUAACCGAAAUGCGUUUGCAAAACGUGCAGGCGCAGCUUGAGUCUUCGGCAGAUGCAACCUGUUGGGUU
((((((((((((((.((.....)).)))---)))))...(((..(((((((...(((((..((((((((((.....))))))))))..))).)).....)))).)))..))))))))).. ( -40.70)
>consensus
CUCGGCGGUGUAUCAAUUAUUUAUAGAUGUUGUAUCUUCAGGGGGCCCUGCAUAACCGAAAUGCGUUUGCAAAACGUGCAGGCGCAGCUUGAGUCUCCGGCAGAUGCAACCUGUUGGGUU
((((((((...(((.((.....)).)))(((((((((.(.((((((...((..........((((((((((.....))))))))))))....)))))).).))))))))))))))))).. (-36.71 = -37.77 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:46 2006