Locus 6127

Sequence ID 3L_DroMel_CAF1
Location 16,223,429 – 16,223,549
Length 120
Max. P 0.621591
window9842

overview

Window 2

Location 16,223,429 – 16,223,549
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 94.03
Mean single sequence MFE -38.12
Consensus MFE -33.65
Energy contribution -34.03
Covariance contribution 0.37
Combinations/Pair 1.06
Mean z-score -1.53
Structure conservation index 0.88
SVM decision value 0.18
SVM RNA-class probability 0.621591
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16223429 120 - 23771897
GUGCGGCACCUGCACGUUGAGCAUGUGGCAGUUUUAGCCAUUUCCUGGCCUGAGGAACUAUUAAAGUGUGUGCGCCUUGCUUGUUCAUAUAAAGGUGUUGCGUGCCACACUGCACAAAAU
..(((((((((......((((((.(((((((((((.((((.....))))....))))))......((....)))))..)).)))))).....)))))))))((((......))))..... ( -40.00)
>DroSec_CAF1 42243 120 - 1
GUGCGACACCUGCACGUUGAGCAUGUGGCAGUUUUAGCCAUUUCCUGGCCUGAGGAACUAUUAAAGUGUGUGCGCCUUGCUUGUUCAUAUAAAUGUGUUGCGUGCCACACUGCACAAAAU
(((((.....))))).(((.((((((((((((..((((((.....)))).....((((...(((.(((....))).)))...)))).........))..)).))))))).))).)))... ( -34.70)
>DroSim_CAF1 43867 120 - 1
GUGCGACACCUGCACGUUGAGCAUGUGGCAGUUUUAGCCAUUUCCUGGCCUGAGGAACUAUUAAAGUGUGUGCACCUUGCUUGUUCAUAUAAAGGUGUUGCGUGCCACACUGAACAAAAU
(((((.....)))))((((.(((((..(((.(((((((((.....)))).....((((...(((.(((....))).)))...))))...))))).)))..))))))).)).......... ( -36.40)
>DroEre_CAF1 42060 118 - 1
GUGCGACACCUGCACGUUGAGCAUGUGGCAGUUUUAGCCAUUUCUUGGCCCGAGCAACUAUUAAAGUG--GGCGCCCUACUUGUUCAUGUAAAGGUGUUGCGUGCCACACAGAACAAAAU
..(((((((((..((((.(((((.(((((.((((..((((.....))))..))))..((((....)))--)..)))..)).)))))))))..)))))))))(((...))).......... ( -41.40)
>consensus
GUGCGACACCUGCACGUUGAGCAUGUGGCAGUUUUAGCCAUUUCCUGGCCUGAGGAACUAUUAAAGUGUGUGCGCCUUGCUUGUUCAUAUAAAGGUGUUGCGUGCCACACUGAACAAAAU
(((((.....)))))((((.(((((..(((.(((((((((.....)))).....((((...(((.(((....))).)))...))))...))))).)))..))))))).)).......... (-33.65 = -34.03 +   0.37)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:45 2006