Locus 6125

Sequence ID 3L_DroMel_CAF1
Location 16,220,961 – 16,221,081
Length 120
Max. P 0.571309
window9839

overview

Window 9

Location 16,220,961 – 16,221,081
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 96.33
Mean single sequence MFE -21.12
Consensus MFE -18.46
Energy contribution -17.90
Covariance contribution -0.56
Combinations/Pair 1.11
Mean z-score -1.28
Structure conservation index 0.87
SVM decision value 0.08
SVM RNA-class probability 0.571309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16220961 120 - 23771897
UAUACUCCUAAGACGAUCUAAUUGUCUUCGGAUAAUUUAGGGACUUUCAGUUUACAAACGAAUAUAAAUUCAAUUUAGCUUAAUGGAAAACCAAAUGUUAUUUAGAAGCCCCUCACAUAU
.....(((.((((((((...)))))))).)))......((((.(((..((...(((...((((....))))............(((....)))..)))...))..))).))))....... ( -22.80)
>DroSec_CAF1 39833 120 - 1
UUUACUCCUUAGACGAUCUAAUUGUCUUCGGAUAAUUUAGGGACUUUCAGUUUACAAACGAAUAAAAAUUCAAUUUAGCUUAAUGGAAAACCAAAUGUUAUUUAGAAGCCCCUCACAUAU
.....(((..(((((((...)))))))..)))......((((.(((..((...(((...((((....))))............(((....)))..)))...))..))).))))....... ( -21.80)
>DroSim_CAF1 41468 120 - 1
UAUACUCCUUAGACGAUCUAAUUGUCUUCGGAUAAUUUAGGGACUUUCAGUUUACAAACGAAUAUAAAUUCAAUUUAGCUUAAUGGAAAACCAAAUGUUAUUUAGAAGCCCCUCACAUAU
.....(((..(((((((...)))))))..)))......((((.(((..((...(((...((((....))))............(((....)))..)))...))..))).))))....... ( -21.80)
>DroEre_CAF1 39689 120 - 1
UAUACUCCUUAGGCGAUCUAAUUGUCUUCGGAUAAUUUAGGGACUUUCAGUUUACAAACGAAUAUUAAUUCAAUUUAGCUUAAUGAAAAACCAAAUGUUAUUUAGAAGCCUCUCACAUAU
..........((((..((((((((((....)))))....((...((((((((....)))((((....))))............)))))..)).........))))).))))......... ( -21.10)
>DroYak_CAF1 76891 120 - 1
UAUACUCCUUAGACGAUCUAAUUGUCUUCGGAUUAUUUAGGGACUUUCAGUUUACAAAGGAAUAUAAAUUCAAUUUAGCUUAAUGAAAAACCAAAUGUUAUUUAGAAGCCUUUCACAUAU
.....((((((((..(((..(......)..)))..))))))))............((((((((....))))......((((..((((.(((.....))).)))).))))))))....... ( -18.10)
>consensus
UAUACUCCUUAGACGAUCUAAUUGUCUUCGGAUAAUUUAGGGACUUUCAGUUUACAAACGAAUAUAAAUUCAAUUUAGCUUAAUGGAAAACCAAAUGUUAUUUAGAAGCCCCUCACAUAU
.....(((..(((((((...)))))))..)))......((((.(((..((...(((...((((....))))............((......))..)))...))..))).))))....... (-18.46 = -17.90 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:42 2006