Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,776,802 – 1,776,971 |
Length | 169 |
Max. P | 0.819384 |
Location | 1,776,802 – 1,776,908 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 114 |
Reading direction | forward |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -43.23 |
Consensus MFE | -31.90 |
Energy contribution | -32.23 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.21 |
Mean z-score | -2.85 |
Structure conservation index | 0.74 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.744108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1776802 106 + 23771897 CCUUGCCAACCUUUUUAAAAUAGGCGACGAACUUUUGCUCCAGCUGGUGGUGCGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGCCUCUCUUCCGGCUU-------- ..(((((...............)))))..............((((((.((.(.((((.((.((.(((((((....))))))).)).)).)))).).)).)))))).-------- ( -39.66) >DroSec_CAF1 14111 106 + 1 CCUUGCUGCCCUUUUUAAAAUAGGCGACGAACUUCUGCUGCAGCUGGUAGUGCGGCACCUUCUCCAGUUGCGCAAGUAGCUGCAGCAGAUGCCUCUCUUCCGGCUU-------- ..(((.((((..((....))..)))).)))...(((((((((((((.(.(((((((..........))))))).).))))))))))))).(((........)))..-------- ( -43.20) >DroSim_CAF1 14078 106 + 1 CCUUGCUGCCCUUUUUAAAAUAGGCGACGAACUUCUGCUGCAGCUGGUGGUGCGGCACCUUCUCCAGUUGCUCAAGCAGCUGCAGCAGAUGCCUCUCUUCCGGCUU-------- ..(((.((((..((....))..)))).)))...(((((((((((((.(((.(((((..........))))))))..))))))))))))).(((........)))..-------- ( -41.40) >DroEre_CAF1 14083 106 + 1 CCUUUCCGCCCUUUCUGAAGUGGGCGACGAACUUGUGCUGCAACUGGUGGCGUGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGACUCUCUUCCGGCUU-------- ((....(((((..........))))).....(.(.((((((....((((......))))......((((((....)))))))))))).).)..........))...-------- ( -36.60) >DroYak_CAF1 14004 106 + 1 CCUUCCCGCUCUUUCUGAAGUGGGCGACAAACUUCUGCUGCAGCUGGGGGCGUGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGGCUCUCUUCCGGCUU-------- .....(((........((((.((((.(......(((((((((((((...(((..((..........))..)))...)))))))))))))).)))).)))))))...-------- ( -45.70) >DroAna_CAF1 13626 114 + 1 CCUUCUGGCCUUUUUUGAAGUAGGCCACGAACUUCUGCUGCAGCUGUGGGCGGGGCACCUUCUCCAGGUGCACCAGCAGCUGCUGGAGAUGCUUCUCUUCCGGCUGGGGCAUGG ..(((((((((..........)))))).)))....((((.((((((..((.((((((.((((..(((.(((....))).)))..)))).)))))).))..)))))).))))... ( -52.80) >consensus CCUUGCCGCCCUUUUUAAAAUAGGCGACGAACUUCUGCUGCAGCUGGUGGCGCGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGCCUCUCUUCCGGCUU________ ......((((............))))...............((((((.((.(.((((.((.((.(((((((....))))))).)).)).)))).).)).))))))......... (-31.90 = -32.23 + 0.34)
Location | 1,776,802 – 1,776,908 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 114 |
Reading direction | reverse |
Mean pairwise identity | 85.21 |
Mean single sequence MFE | -40.23 |
Consensus MFE | -30.76 |
Energy contribution | -30.77 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.32 |
Mean z-score | -1.98 |
Structure conservation index | 0.76 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.571362 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1776802 106 - 23771897 --------AAGCCGGAAGAGAGGCAUCUGCUGCAGCUGCUUGCGCAACUGGAGAAGGUGCCGCACCACCAGCUGGAGCAAAAGUUCGUCGCCUAUUUUAAAAAGGUUGGCAAGG --------..((((((.(((.(((((((.((.(((.(((....))).))).)).)))))))((.(((.....))).)).....))).))((((.........)))))))).... ( -36.80) >DroSec_CAF1 14111 106 - 1 --------AAGCCGGAAGAGAGGCAUCUGCUGCAGCUACUUGCGCAACUGGAGAAGGUGCCGCACUACCAGCUGCAGCAGAAGUUCGUCGCCUAUUUUAAAAAGGGCAGCAAGG --------..(((........))).((((((((((((...((((((.((.....)).)).)))).....)))))))))))).....((.((((..........)))).)).... ( -41.00) >DroSim_CAF1 14078 106 - 1 --------AAGCCGGAAGAGAGGCAUCUGCUGCAGCUGCUUGAGCAACUGGAGAAGGUGCCGCACCACCAGCUGCAGCAGAAGUUCGUCGCCUAUUUUAAAAAGGGCAGCAAGG --------..(((........))).((((((((((((((((.((...)).)))..((((...))))..))))))))))))).....((.((((..........)))).)).... ( -42.80) >DroEre_CAF1 14083 106 - 1 --------AAGCCGGAAGAGAGUCAUCUGCUGCAGCUGCUUGCGCAACUGGAGAAGGUGCCACGCCACCAGUUGCAGCACAAGUUCGUCGCCCACUUCAGAAAGGGCGGAAAGG --------....(((((((......)))((((((((((...(((..(((......)))....)))...)))))))))).....))))((((((..........))))))..... ( -35.10) >DroYak_CAF1 14004 106 - 1 --------AAGCCGGAAGAGAGCCAUCUGCUGCAGCUGCUUGCGCAACUGGAGAAGGUGCCACGCCCCCAGCUGCAGCAGAAGUUUGUCGCCCACUUCAGAAAGAGCGGGAAGG --------...((.((...((((..(((((((((((((...(((..(((......)))....)))...))))))))))))).)))).)).(((.(((......))).)))..)) ( -41.30) >DroAna_CAF1 13626 114 - 1 CCAUGCCCCAGCCGGAAGAGAAGCAUCUCCAGCAGCUGCUGGUGCACCUGGAGAAGGUGCCCCGCCCACAGCUGCAGCAGAAGUUCGUGGCCUACUUCAAAAAAGGCCAGAAGG ((.(((.......(((.((......))))).(((((((..(((((((((.....))))))...)))..))))))).)))....(((.((((((..........))))))))))) ( -44.40) >consensus ________AAGCCGGAAGAGAGGCAUCUGCUGCAGCUGCUUGCGCAACUGGAGAAGGUGCCGCACCACCAGCUGCAGCAGAAGUUCGUCGCCUACUUCAAAAAGGGCGGCAAGG ............(....).(((.(.(((((((((((((..((.(((.((.....)).)))))......))))))))))))).)))).((((((..........))))))..... (-30.76 = -30.77 + 0.00)
Location | 1,776,842 – 1,776,935 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 81.13 |
Mean single sequence MFE | -31.05 |
Consensus MFE | -18.77 |
Energy contribution | -18.17 |
Covariance contribution | -0.61 |
Combinations/Pair | 1.44 |
Mean z-score | -1.82 |
Structure conservation index | 0.60 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.602210 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1776842 93 + 23771897 CAGCUGGUGGUGCGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGCC---UCUCUUCCGGCUUCGUCAUUUCUGUAUCUGACGCUUUGAG .((((((.((.(.((((.((.((.(((((((....))))))).)).)).))))---.).)).)))))).(((((..........)))))....... ( -39.00) >DroVir_CAF1 14973 88 + 1 UAGCUGAUAAAAAUCCACAAGUUCCAGUUUUUUAAGCAACUGCUCCAGCUGCUGCUCCUGUUCCAGUU-C--CAGUU-----CCAGUUGCUUUGCG .(((((..................)))))....(((((((((....(((((..(((........))).-.--)))))-----.))))))))).... ( -18.47) >DroSec_CAF1 14151 93 + 1 CAGCUGGUAGUGCGGCACCUUCUCCAGUUGCGCAAGUAGCUGCAGCAGAUGCC---UCUCUUCCGGCUUCGUCAUUUCUGUAUCUGCCGCUUUGAG .(((.((((((((((((.((.((.(((((((....))))))).)).)).))))---........(((...)))......))).))))))))..... ( -33.80) >DroSim_CAF1 14118 93 + 1 CAGCUGGUGGUGCGGCACCUUCUCCAGUUGCUCAAGCAGCUGCAGCAGAUGCC---UCUCUUCCGGCUUCGUCAUUUCUGUAUCUGCCGCUUUGAG .((((((.((.(.((((.((.((.(((((((....))))))).)).)).))))---.).)).))))))............................ ( -32.10) >DroEre_CAF1 14123 93 + 1 CAACUGGUGGCGUGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGAC---UCUCUUCCGGCUUCGUCAUUUCUGUAUCUCCCGCUUUGAG ...((.(.((((.((.........(((((((....)))))))(((.(((((((---..............)))))))))).....)))))).).)) ( -28.84) >DroYak_CAF1 14044 93 + 1 CAGCUGGGGGCGUGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGGC---UCUCUUCCGGCUUCGUCAUUUCUGUAUCUGCCGCUUUGAG .(((((((((.(.(.((.((.((.(((((((....))))))).)).)).)).)---.).)))))))))............................ ( -34.10) >consensus CAGCUGGUGGUGCGGCACCUUCUCCAGUUGCGCAAGCAGCUGCAGCAGAUGCC___UCUCUUCCGGCUUCGUCAUUUCUGUAUCUGCCGCUUUGAG .((((((.((..........(((.(((((((....)))))))....)))..........)).))))))............................ (-18.77 = -18.17 + -0.61)
Location | 1,776,879 – 1,776,971 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 95.29 |
Mean single sequence MFE | -26.07 |
Consensus MFE | -23.05 |
Energy contribution | -23.80 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.88 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.819384 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1776879 92 - 23771897 GCACAGAAAAUAGAUCACCGGAACAUGACUGCAGAGCUCAAAGCGUCAGAUACAGAAAUGACGAAGCCGGAAGAGAGGCAUCUGCUGCAGCU ............................((((((.((.....))..(((((.((....)).....(((........)))))))))))))).. ( -21.30) >DroSec_CAF1 14188 92 - 1 GCACAGAAAAUAGAUCACCGGAUCAUGGCCGCAGAGCUCAAAGCGGCAGAUACAGAAAUGACGAAGCCGGAAGAGAGGCAUCUGCUGCAGCU ((..........((((....)))).((((......)).))..(((((((((.((....)).....(((........)))))))))))).)). ( -28.50) >DroSim_CAF1 14155 92 - 1 GCACAGAAAAUAGAUCACCGGAUCAUGACCGCAGAGCUCAAAGCGGCAGAUACAGAAAUGACGAAGCCGGAAGAGAGGCAUCUGCUGCAGCU ((..........((((....)))).(((.(.....).)))..(((((((((.((....)).....(((........)))))))))))).)). ( -27.90) >DroYak_CAF1 14081 92 - 1 GCGCAGAAAAUAGAUCACCAGAUCAUGCCCACAGAGCUCAAAGCGGCAGAUACAGAAAUGACGAAGCCGGAAGAGAGCCAUCUGCUGCAGCU ((((((......((((....)))).......((((((((....((((.....((....)).....)))).....))))..)))))))).)). ( -26.60) >consensus GCACAGAAAAUAGAUCACCGGAUCAUGACCGCAGAGCUCAAAGCGGCAGAUACAGAAAUGACGAAGCCGGAAGAGAGGCAUCUGCUGCAGCU ((..........((((....))))..................(((((((((.((....)).....(((........)))))))))))).)). (-23.05 = -23.80 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:43 2006