Locus 6119

Sequence ID 3L_DroMel_CAF1
Location 16,214,300 – 16,214,417
Length 117
Max. P 0.631686
window9830

overview

Window 0

Location 16,214,300 – 16,214,417
Length 117
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 95.72
Mean single sequence MFE -26.82
Consensus MFE -23.86
Energy contribution -24.42
Covariance contribution 0.56
Combinations/Pair 1.07
Mean z-score -1.24
Structure conservation index 0.89
SVM decision value 0.20
SVM RNA-class probability 0.631686
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16214300 117 + 23771897
CCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUCGGACACAACAUAUUA---U
((((((((((((((.....((.(((..((.((((....)).)).))...))))).......))))))))))))))..........((((.((.........))...))))......---. ( -28.60)
>DroSec_CAF1 33056 120 + 1
CCAUCAAGAUAUCGACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUUGGACACAACAUAUUAUUAU
((((((((((((((((.....))).......(((...((.....))..)))...........)))))))))))))..........((((.((.........))...)))).......... ( -27.90)
>DroSim_CAF1 34898 120 + 1
CCAUCAAGAUAUCCACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUCGGACACAACAUAUUAUUAU
((((((((((((((.(...((.(((..((.((((....)).)).))...)))))....).).)))))))))))))..........((((.((.........))...)))).......... ( -26.20)
>DroEre_CAF1 32497 117 + 1
CCAUCAAGAUAUCUGCACAGCGUCUUGACAACCGAAAACGAGUGGUAACGAAGCAACAGAGGUAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUCGGACACAACAUAUUA---U
((((((((((((((.....((.((...((.((((....)).)).))...)).))......)).))))))))))))..........((((.((.........))...))))......---. ( -24.90)
>DroYak_CAF1 69548 117 + 1
CCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGGGAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUCGGACAGAACAUAUUA---U
((((((((((((((.....((.(((..((.((((....)).)).))...))))).......))))))))))))))...........(((.((.........)).))).........---. ( -26.50)
>consensus
CCAUCAAGAUAUCUACACAGCGUCUUGACAACCGAAAACGAGUGGUAACGGAGCAACAGAGAGAUAUCUUGAUGGCAAUUCAAUCGUUGACCUACUUUCUCGGACACAACAUAUUA___U
((((((((((((((.....((.((...((.((((....)).)).))...)).)).......))))))))))))))..........((((.((.........))...)))).......... (-23.86 = -24.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:33 2006