Locus 6118

Sequence ID 3L_DroMel_CAF1
Location 16,214,060 – 16,214,180
Length 120
Max. P 0.737415
window9829

overview

Window 9

Location 16,214,060 – 16,214,180
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 84.36
Mean single sequence MFE -32.94
Consensus MFE -22.88
Energy contribution -23.36
Covariance contribution 0.48
Combinations/Pair 1.16
Mean z-score -1.94
Structure conservation index 0.69
SVM decision value 0.44
SVM RNA-class probability 0.737415
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16214060 120 - 23771897
ACAGUUUGAUUUGACAUCGGAUCGAAUCGGGAAUCGGUUUGGUUUCGGAAUGGGUUUGAAUUUUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAAUUCGAAUUAAUGGCGAAUUCCCGUU
...((((((((((....))))))))))(((((((((.......((((((.....)))))).....(((((((((((((((.((...)).)))))..)).)))))))).)).))))))).. ( -33.30)
>DroSec_CAF1 32816 120 - 1
ACAGCUUGAUUUGACAUCGGAUCGAAGUGGGAAUCGGUUUGGUUUUGGAAUCGGUUUGAAUUCUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAUUUCGAAUUAAUGGCGAAUUCCCGUG
...((((((((((....)))))).))))((((((((((((.......))))))))))((((((..(((((((((((((((.((...)).)))))))...))))))))..))))))))... ( -35.40)
>DroSim_CAF1 34658 120 - 1
ACAGCUUGAUUUGACAUCGGAUCGAAACGGGAAUCGGUUUGGUUUCGGAAUGGGUUUGAAUUCUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAUUUCGAAUUAAUGGCGAAUUCCCGUU
.....((((((((....))))))))(((((((((((.........((((((........))))))(((((((((((((((.((...)).)))))))...)))))))).)).))))))))) ( -37.70)
>DroEre_CAF1 32274 103 - 1
ACAGUUUGAUUUGACAACGGAUCGAAUCGGGA-----------------GUGGGUUUCAAUUUUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAUUUUGAAUUAAUGGCGAAGUCCCGUG
...((((((((((....))))))))))(((((-----------------.((.....)).((((((((((((((((((((.((...)).)))))))...))))))).))))))))))).. ( -29.00)
>DroYak_CAF1 69338 103 - 1
ACAGUUUGAUUUGACAUUGGGUUGAAUCGGGA-----------------GUGGGUUUGAAUUUUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAUUUUGUAUUAAUGGCGAAUUCCCAUU
....(((((((..((.....))..)))))))(-----------------(((((.......(((((((((((.(((((((.((...)).)))))))....)))))).)))))..)))))) ( -29.30)
>consensus
ACAGUUUGAUUUGACAUCGGAUCGAAUCGGGAAUCGGUUUGGUUU_GGAAUGGGUUUGAAUUUUGCAUUGAUUGAUUUGUGGCUGAGCGACAGAUUUCGAAUUAAUGGCGAAUUCCCGUU
.(.((((((((((....)))))))))).)....................(((((....(((((..(((((((((((((((.((...)).)))))))...))))))))..)))))))))). (-22.88 = -23.36 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:32 2006