Locus 6113

Sequence ID 3L_DroMel_CAF1
Location 16,210,551 – 16,210,671
Length 120
Max. P 0.621501
window9819

overview

Window 9

Location 16,210,551 – 16,210,671
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 95.66
Mean single sequence MFE -50.10
Consensus MFE -45.64
Energy contribution -46.48
Covariance contribution 0.84
Combinations/Pair 1.07
Mean z-score -1.18
Structure conservation index 0.91
SVM decision value 0.18
SVM RNA-class probability 0.621501
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16210551 120 - 23771897
AUCGCCGGUCGAAGGUUAAUGCCUGCCGUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCUCGUUUCAGCCGGGCCAGGAAUCCUUGAGUGGCUC
...((((.((((.((((..(((((((.(((((.((((((.......)))))).))))).)).....(.((((((.(((((...))))).)))))))))).))..)))).)))).)))).. ( -51.40)
>DroSec_CAF1 29373 120 - 1
AUCGCCGGUCGAAGGUUAACGCCUGCCGUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCUCGUUUCAGCCGGGCCAGGAAUCCUUGAGCGGCUC
...((((.((((.((((...((((((.(((((.((((((.......)))))).))))).)).....(.((((((.(((((...))))).)))))))))))....)))).)))).)))).. ( -52.90)
>DroSim_CAF1 31252 120 - 1
AUCGCCGGUCGAAGGUUAACGCCUGCCGUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCUCGGUUCAGCCGGGCCAGGAAUCCUUGAGCGGCUC
...((((.((((.((((...((((((.(((((.((((((.......)))))).))))).)).....(.((((((((((((...)))))))))))))))))....)))).)))).)))).. ( -59.50)
>DroEre_CAF1 28882 119 - 1
-UCGCUGGUCGAAGGUUAACGCCUGCCAUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCGCGUUGGAGCCGGGCCAGGAAUCCUUGAGCGGCUC
-..((((.((.((((......((((((.....))..(((((.(..(((((.((((((..((..(((........))).)))))))))))))..).)))))))))...)))))).)))).. ( -41.50)
>DroYak_CAF1 65953 118 - 1
-UCGUUGGUCGAAGGUUAACGCCUGCCGUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCUCGUUGGAGCCG-GCCAGGAAUCCUUGAGCGGCUC
-..((((.((((.((((..((..(((.(((((.((((((.......)))))).))))).))).))..))))...((..((((.((((....))))))-))..)).....)))).)))).. ( -45.20)
>consensus
AUCGCCGGUCGAAGGUUAACGCCUGCCGUGGAGGUCGUCCGAUGACGAUGACGUUUACCGCAACGGGAGCUGAACCGAGCUGAGCUCGUUUCAGCCGGGCCAGGAAUCCUUGAGCGGCUC
...((((.((((.((((...((((((.(((((.((((((.......)))))).))))).)).....(.((((((.(((((...))))).)))))))))))....)))).)))).)))).. (-45.64 = -46.48 +   0.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:21 2006