Locus 6111

Sequence ID 3L_DroMel_CAF1
Location 16,208,696 – 16,208,815
Length 119
Max. P 0.576754
window9815

overview

Window 5

Location 16,208,696 – 16,208,815
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 92.70
Mean single sequence MFE -32.40
Consensus MFE -27.30
Energy contribution -27.74
Covariance contribution 0.44
Combinations/Pair 1.03
Mean z-score -1.28
Structure conservation index 0.84
SVM decision value 0.09
SVM RNA-class probability 0.576754
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16208696 119 + 23771897
AAAAAAAGACAGCAUCAUCCGC-GGAAGGAAACUGUACCAAAUGCAGUUCACUCGCCGGUGGCCUUAUUCACAGCCGAUUCAAUUAAGUGGCAAGAAGAUGGAGGAGGCCACGUCCGAAU
.......(((...........(-((.((..(((((((.....)))))))..))..)))((((((((.(((((.((((...........)))).....).)))).)))))))))))..... ( -34.30)
>DroSec_CAF1 27535 118 + 1
A-AAAAAGUUAGCAUCAUCCGC-GGAAGGAAACUGUACCAAAUGCAGUUCACUCGCCGGUGGCCUUAUUCACAGCCGAUUCAAUUAAGUGGCAAGAAGAUGGAGGAGGCCACGUCCGAAU
.-...................(-(((((..(((((((.....)))))))..)).....((((((((.(((((.((((...........)))).....).)))).)))))))).))))... ( -31.70)
>DroSim_CAF1 29391 118 + 1
A-AAAAAGUUAGCAUCAUCCGC-GGAAGGAAACUGUACCAAAUGCAGUUCACUCGCCGGUGGCCUUAUUCACAGCCGAUUCAAUUAAGUGGCAAGAAGAUGGAGGAGGCCACGUCCGAAU
.-...................(-(((((..(((((((.....)))))))..)).....((((((((.(((((.((((...........)))).....).)))).)))))))).))))... ( -31.70)
>DroEre_CAF1 26870 119 + 1
A-AAAAAGUUACCAUCAUCCGCUGGAAGGAAACUGUACCAAAUGCAGUUCACUCGCCGGUGGCCUUAUUCACAGCCGAUUCAAUUAUGUGGCAAAAAGAUGGAGGAGGUCACGUCCGAAC
.-.........(((((..(((((((.((..(((((((.....)))))))..))..)))))))...........((((((......)).)))).....))))).(((.(...).))).... ( -34.50)
>DroYak_CAF1 63869 114 + 1
A-AAAAAGAAACCAUCAUUCGCUGGAAGGAAACUGUACUAAAUGCAGU-----GGUCGGUGGCCUUAUUCACAGCCGAUUCAAUUAUGUGGCAAAAAGAUGGAGGAGGCCACGUCCGAAC
.-....................((((.((..((((((.....))))))-----..)).((((((((.(((((.((((((......)).)))).....).)))).)))))))).))))... ( -29.80)
>consensus
A_AAAAAGUUAGCAUCAUCCGC_GGAAGGAAACUGUACCAAAUGCAGUUCACUCGCCGGUGGCCUUAUUCACAGCCGAUUCAAUUAAGUGGCAAGAAGAUGGAGGAGGCCACGUCCGAAU
.......................(((((..(((((((.....)))))))..)).....((((((((.(((((.((((...........)))).....).)))).)))))))).))).... (-27.30 = -27.74 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:17 2006