Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,207,732 – 16,207,851 |
Length | 119 |
Max. P | 0.962355 |
Location | 16,207,732 – 16,207,851 |
---|---|
Length | 119 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.49 |
Mean single sequence MFE | -29.40 |
Consensus MFE | -25.42 |
Energy contribution | -25.82 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.07 |
Mean z-score | -1.87 |
Structure conservation index | 0.86 |
SVM decision value | 1.54 |
SVM RNA-class probability | 0.962355 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16207732 119 - 23771897 AUUUGGCCAA-AACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA (((((.(((.-...((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90) >DroSec_CAF1 26567 120 - 1 AUUUGGCCAAAAACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA (((((.(((.....((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90) >DroSim_CAF1 28458 120 - 1 AUUUGGCCAAAAACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA (((((.(((.....((((.......(....)((.(((.((((...(((((((.....))))))).)))).))).....))...))))..((((.......)))).....))).))))).. ( -30.90) >DroEre_CAF1 25910 119 - 1 AUUUGGCCAA-AAUGCUCGAAAGUAGGCAACGAAAACGGGCCAAAGCGAACGACAAAUGUUUAUGGAGCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUGUGACAAAUGAGCGAAUGA .(((((((..-..(((((....)..)))).((....)))))))))((......(((.(((((...))))).)))...((((.(.(....)..........).))))......))...... ( -26.00) >DroYak_CAF1 62905 119 - 1 AUUUGGCAAA-AAUGCUCGAAAGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA (((((.(...-..(((((....)..)))).....(((.((((...(((((((.....))))))).)))).)))....((((((.(....)..........)))))).....).))))).. ( -28.30) >consensus AUUUGGCCAA_AACGCUCGAAUGUAGGCAACGAAAACGGGCCAAAGUGAACGACAAAUGUUUAUGGGCCAGUUGGAAGUCAGAGGGCAACAAAAACACGAUUUGACAAAUGGGCGAAUGA .............((((((......(....)...(((.((((...(((((((.....))))))).)))).)))....((((((.(....)..........))))))...))))))..... (-25.42 = -25.82 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:16 2006