Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,776,329 – 1,776,422 |
Length | 93 |
Max. P | 0.727302 |
Location | 1,776,329 – 1,776,422 |
---|---|
Length | 93 |
Sequences | 3 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 94.27 |
Mean single sequence MFE | -21.68 |
Consensus MFE | -17.92 |
Energy contribution | -17.70 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.06 |
Mean z-score | -2.45 |
Structure conservation index | 0.83 |
SVM decision value | 0.41 |
SVM RNA-class probability | 0.727302 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1776329 93 - 23771897 ACACCUAUCCAGAGCCAUCAGCGAUCUAAGAAGAAGAUCACGCCCCAAAAACAGCAGCAAAAUCAACAUGCAUCAUUGGGUUCAGGAACUGGA .......(((((..((....(.(((((.......))))).)..(((((.....(((............)))....)))))....))..))))) ( -21.90) >DroSec_CAF1 13638 93 - 1 ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACACUCAGCAUUGGGUUCAGGAACUGGA .......(((((..((......(((((.......)))))....((((((....)).((..............))..))))....))..))))) ( -21.44) >DroSim_CAF1 13605 93 - 1 ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACAUUCAGCAUUGGGUUCAGGAACUGGA .......(((((..((......(((((.......)))))....((((((....)).((..(((....)))..))..))))....))..))))) ( -21.70) >consensus ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACAUUCAGCAUUGGGUUCAGGAACUGGA .......(((((..((......(((((.......)))))....(((((...........................)))))....))..))))) (-17.92 = -17.70 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:40 2006