Locus 611

Sequence ID 3L_DroMel_CAF1
Location 1,776,329 – 1,776,422
Length 93
Max. P 0.727302
window937

overview

Window 7

Location 1,776,329 – 1,776,422
Length 93
Sequences 3
Columns 93
Reading direction reverse
Mean pairwise identity 94.27
Mean single sequence MFE -21.68
Consensus MFE -17.92
Energy contribution -17.70
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.45
Structure conservation index 0.83
SVM decision value 0.41
SVM RNA-class probability 0.727302
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1776329 93 - 23771897
ACACCUAUCCAGAGCCAUCAGCGAUCUAAGAAGAAGAUCACGCCCCAAAAACAGCAGCAAAAUCAACAUGCAUCAUUGGGUUCAGGAACUGGA
.......(((((..((....(.(((((.......))))).)..(((((.....(((............)))....)))))....))..))))) ( -21.90)
>DroSec_CAF1 13638 93 - 1
ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACACUCAGCAUUGGGUUCAGGAACUGGA
.......(((((..((......(((((.......)))))....((((((....)).((..............))..))))....))..))))) ( -21.44)
>DroSim_CAF1 13605 93 - 1
ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACAUUCAGCAUUGGGUUCAGGAACUGGA
.......(((((..((......(((((.......)))))....((((((....)).((..(((....)))..))..))))....))..))))) ( -21.70)
>consensus
ACCCCUAUCCAGAGCCAUCAGCGAUCUAAGAAAAAGAUCACCCCCCAGCAACAGCAGCAAAAUCAACAUUCAGCAUUGGGUUCAGGAACUGGA
.......(((((..((......(((((.......)))))....(((((...........................)))))....))..))))) (-17.92 = -17.70 +  -0.22) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:40 2006