Locus 6107

Sequence ID 3L_DroMel_CAF1
Location 16,205,130 – 16,205,234
Length 104
Max. P 0.654718
window9809

overview

Window 9

Location 16,205,130 – 16,205,234
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 76.70
Mean single sequence MFE -24.78
Consensus MFE -16.76
Energy contribution -16.57
Covariance contribution -0.19
Combinations/Pair 1.19
Mean z-score -1.61
Structure conservation index 0.68
SVM decision value 0.25
SVM RNA-class probability 0.654718
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16205130 104 + 23771897
GCAUAUUUUUGAGUGAUGUGGGAAUAGAACAGCAAUGGAUGCUUAAAAGUAAUUAUUUUAAAUGUUAGUA----UUGUCAAUAUAGUUCACUCACUACAGAAUAGCUA------------
((.(((((((((((((..(((.((((.((((..(((((.((((....)))).))))).....))))..))----)).))).......)))))))....))))))))..------------ ( -20.60)
>DroSec_CAF1 23987 106 + 1
GCAUAUUUUUGAGUGAUGUGGGAAUAGAGCAGCAACAGAUGCUUCAAAGUAAUUAUUUUAAAUGUUAAUAGGUGCUGUCAAUAUUUUUCACUCACUACAGAAG--UUU------------
....((((((((((((.(((..((((..((((((......((((.(((((....))))).)).)).......))))))...)).))..)))))))).))))))--)..------------ ( -25.12)
>DroSim_CAF1 25893 106 + 1
GCAUAUUUUUGAGUGAUGUGGGAAUAGAGCAGCAAUGGAUGCUUUAAAGUAAUUAUUUUAAAUGUUAAUAGGGGCUGUCAAUAUUGUUCACUCACUACAGAAG--UUU------------
....((((((((((((.(((((((((..(((((..((...((((((((((....)))))))).))...))...)))))...)))).)))))))))).))))))--)..------------ ( -28.20)
>DroEre_CAF1 23448 117 + 1
GCAUAUUUUUGAGUGAUGUGGGAAUAGAACAGCAAUGGAUGCCGA-AGAUAAUUGCAAUAAAUGUUACUUGAAGUUGUUCAUUUUGUACGCUCACUGCAAGAA--AUGAAAUGGCGUAGC
.(((.(((((((((((((((.(((..(((((((..(((...)))(-((.((((..........)))))))...)))))))..))).)))).))))).))))))--)))............ ( -25.20)
>consensus
GCAUAUUUUUGAGUGAUGUGGGAAUAGAACAGCAAUGGAUGCUUAAAAGUAAUUAUUUUAAAUGUUAAUAGG_GCUGUCAAUAUUGUUCACUCACUACAGAAG__UUU____________
......((((((((((.(((((((((..(((((......((((....))))(((......)))..........)))))...)))).)))))))))).))))).................. (-16.76 = -16.57 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:11 2006