Locus 6106

Sequence ID 3L_DroMel_CAF1
Location 16,203,468 – 16,203,567
Length 99
Max. P 0.500000
window9808

overview

Window 8

Location 16,203,468 – 16,203,567
Length 99
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 81.10
Mean single sequence MFE -34.95
Consensus MFE -22.70
Energy contribution -23.76
Covariance contribution 1.06
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.65
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16203468 99 - 23771897
UACAAUUUGUUUAUUGGUAACCAGAUGGGCACACCCAAUGCCCCAAUGGCAUCCAAGUGCUUCAAAUUGGCAGCGGGCAGAUAAA-GUG-------------------UG-GCCCAGUGA
..(((((((....((((...(((...(((((.......)))))...)))...))))......))))))).....((((.......-...-------------------..-))))..... ( -29.20)
>DroSec_CAF1 22367 104 - 1
UACAAUUUGUUUAUUGGUAACCAGAUGGGCACACCCAACGCCCCAAUGGCCUCCAAGUGCUUCAAAUUGGCAGCGGGCAGAUAAA-GUGGC--------------UUGUG-GCCCAGUGA
..(((((((....((((...(((...((((.........))))...)))...))))......))))))).....((((..((((.-.....--------------)))).-))))..... ( -30.10)
>DroSim_CAF1 24259 105 - 1
UACAAUUUGUUUAUUGGUAACCAGAUGGGCACACCCAAUGCCCCAAUGGCCUCCAAGUGCUUCAAAUUGGCAACGGGCAGAUAAA-GUGAC--------------UUGUGUGCCCAGUGA
..(((((((....((((...(((...(((((.......)))))...)))...))))......))))))).((..(((((.((((.-.....--------------)))).)))))..)). ( -35.70)
>DroYak_CAF1 58688 119 - 1
UGCAAUUUGCAUAUUGGUAGCCAGAUGGGCACUGCCAAUGCCCCAACGGCCUCGACUUGCUUCAAGUGGAAAACGGGCAGAUUGCUGUGCCCCUUGGGACCGCAAUUGUG-GCCCAGUGA
.(((((((((.(((((((((((.....)))..))))))))......((...((.(((((...))))).))...)).)))))))))......(.(((((.((((....)))-)))))).). ( -44.80)
>consensus
UACAAUUUGUUUAUUGGUAACCAGAUGGGCACACCCAAUGCCCCAAUGGCCUCCAAGUGCUUCAAAUUGGCAACGGGCAGAUAAA_GUG_C______________UUGUG_GCCCAGUGA
..(((((((....((((...(((...(((((.......)))))...)))...))))......))))))).....((((.................................))))..... (-22.70 = -23.76 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:10 2006