| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,201,040 – 16,201,160 |
| Length | 120 |
| Max. P | 0.612552 |
| Location | 16,201,040 – 16,201,160 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 92.67 |
| Mean single sequence MFE | -37.84 |
| Consensus MFE | -31.94 |
| Energy contribution | -31.34 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.16 |
| SVM RNA-class probability | 0.612552 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16201040 120 - 23771897 GCAGCUGCGGUAUGGGGAAUGCUUGUCUUUGUAAACUCGUACAGCGGUUUCUCCGGAUGGAAUUGUACUCCAUAGAAGGGGUACUUUAUGUGCUCUACGGUGGAAAUAAACUCAACGCCA ((.(((((.(((((((...(((........)))..))))))).)))))(((.(((.(((((.......)))))....(((((((.....))))))).))).)))............)).. ( -37.30) >DroSec_CAF1 19983 120 - 1 GCAGCUGCGGUAUGGGGAAUGCUCGUCUUUGUAAACUCGUACAGCGGCUUCUCCGGAUGGAAUUGUACUCCAUAGAAGGGGUACUUUAUGUGCUCUACGGUGGAAAUGAACUCAACUCCA (.((((((.(((((((...(((........)))..))))))).)))))).).(((.(((((.......)))))....(((((((.....))))))).)))((((..((....))..)))) ( -39.50) >DroSim_CAF1 21834 120 - 1 GCAGCUGCGGUAUGAGGAAUGCUCGUCUUUGUAAACUCGUACAGCGGCUUCUCCGGAUGGAAUUGUACUCCAUAGAAGGGGUACUUUAUGUGCUCUACGGUGGAAAUGAACUCAACGCCG ((.(((((.(((((((...(((........)))..))))))).)))))(((.(((.(((((.......)))))....(((((((.....))))))).))).)))............)).. ( -40.50) >DroEre_CAF1 19428 120 - 1 GCAGCUGCGGUAUGAGGAAUGGUGUUCUUUGUAAACUCGUACAGCGGCUUCUCCGGAUGGAAUUGUACCCCAUAGAAGGGGUAUUUUAUGUGCUCUACAGUGGAAAUGAACUCUAUGCCA (.((((((.(((((((..(..(......)..)...))))))).)))))).)...(((((((...(((((((......)))))))(((((.((((....))))...))))).))))).)). ( -36.50) >DroYak_CAF1 56306 120 - 1 GCAGCUCCGGUAUGAGGAAUGGUCUUUUUUGUAAACUCGUACAGCGGCUUCUCCGGAUGGAAUUGUACCCCAUAGAAGGGGUACUUUAUGUGCUCCACUGUAGAAAUAAACUCUAUGCCA ((((((.(.(((((((..(..(......)..)...))))))).).)))((((.(((.((((((.(((((((......)))))))...))....))))))).))))..........))).. ( -35.40) >consensus GCAGCUGCGGUAUGAGGAAUGCUCGUCUUUGUAAACUCGUACAGCGGCUUCUCCGGAUGGAAUUGUACUCCAUAGAAGGGGUACUUUAUGUGCUCUACGGUGGAAAUGAACUCAACGCCA (.((((((.(((((((...(((........)))..))))))).)))))).)...((...((...(((((((......)))))))(((((...(((....).))..))))).))....)). (-31.94 = -31.34 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:07 2006