Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,200,127 – 16,200,247 |
Length | 120 |
Max. P | 0.974443 |
Location | 16,200,127 – 16,200,247 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 94.58 |
Mean single sequence MFE | -35.50 |
Consensus MFE | -30.80 |
Energy contribution | -31.80 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.81 |
Structure conservation index | 0.87 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974443 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16200127 120 - 23771897 CAAAUCGGCACUACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAAUGUCUCGAGAUCAAACCAUCGACGUAAACUUCCUGUGUG .......((((.....((((....)))).(((((((((........(((((((((((....)))).)))))))........))))))))).........................)))). ( -30.69) >DroSec_CAF1 19075 120 - 1 CAAAUUGGCACCACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAAGCCAUCGACGUAAACUUCCUGUGUC .....((((.......((((....)))).((((((((((((.....(((((((((((....)))).))))))).....)))))))))))).....))))..((((((.......)))))) ( -39.40) >DroSim_CAF1 20921 120 - 1 CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAACCCAUCGACGUAAACUUCCUGUGUG .......(((((....((((....)))).((((((((((((.....(((((((((((....)))).))))))).....))))))))))))........................))))). ( -37.70) >DroEre_CAF1 18523 120 - 1 CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUGUCAAAGUGCCUCGAGAUCAGCCCAUCUACGUAAACUUCCUGCGUG ......(((.......((((....)))).((((((.(((((.(((.(((((((((((....)))).))))))))))..))))).))))))....)))....((((((.......)))))) ( -36.80) >DroYak_CAF1 55393 120 - 1 CAAAUCGGCACAACUCGGGCUCCAGCACCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUGUCAAAGUGUCUAGAGAUCAAUCCAUCUACGUAAACUUCCUGCGUA ......((.....(((((((....)).))....((((((((.(((.(((((((((((....)))).))))))))))..)))))))).)))......))...((((((.......)))))) ( -32.90) >consensus CAAAUCGGCACAACUCGGGCUCCAGCUCCUUCGAGAUACUUCACAUACGAGGCGGCUAUAUAGCUGGUCUUGUUAUCAAAGUGUCUCGAGAUCAACCCAUCGACGUAAACUUCCUGUGUG .......((((.....((((....)).))((((((((((((.....(((((((((((....)))).))))))).....)))))))))))).........................)))). (-30.80 = -31.80 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:04 2006