Locus 6101

Sequence ID 3L_DroMel_CAF1
Location 16,199,432 – 16,199,552
Length 120
Max. P 0.909043
window9801

overview

Window 1

Location 16,199,432 – 16,199,552
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.58
Mean single sequence MFE -34.42
Consensus MFE -29.88
Energy contribution -29.96
Covariance contribution 0.08
Combinations/Pair 1.06
Mean z-score -1.54
Structure conservation index 0.87
SVM decision value 1.06
SVM RNA-class probability 0.909043
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16199432 120 - 23771897
AUUGUGACCGUGGCACAGGGUGCUCAAUGAGAAGGGGAAUUACUCCUGGGGCUUCCAUCGAAAGUUGGAUAAAAACCUGUUUUAUUCGGGCACUAUUGGAUAAUUAACUAAUUGCAUCGA
.(((((.(....))))))(((((((((((((((((((.....)))))(((...((((.(....).))))......))).))))))).)))))))(((((........)))))........ ( -33.70)
>DroSec_CAF1 18393 120 - 1
UUUGUGACCGUGGCACAGGGUGCUCAAUGAGAAGGGGAAUAACUCCUGGGGCUUCCAUCGAAAGUUGGAUAAAAACCUGUUUUAUUCGGGCACAAUUGGAUAAUUAACUAAUUGCAUCGA
((((((.(....)))))))((((((((((((((((((.....)))))(((...((((.(....).))))......))).))))))).))))))((((((........))))))....... ( -34.50)
>DroSim_CAF1 20241 120 - 1
AUUGUGACCGUGGCACAGGGUGCUCAAUGAGAAGGGGAAUAACUCCUGGGGCUUCCAUCGAAAGUUGGAUAAAAACCUGUUUUAUUCGGUCACAAUUGGAUAAUUAACUAAUUGCAUCGA
(((((((((((((.(((((..((((.......(((((.....))))).)))).((((.(....).))))......))))).)))..))))))))))........................ ( -37.30)
>DroEre_CAF1 17866 110 - 1
GCUGUGACCGUGGCACAUGGUGCUCAAUGAGAGGGGGAAUAACUUCUGGGGCUUCCAUCGAAAGUUGGAUAAAAACCUGUUUUAUUCGGGCACUAUUGGAUAAUUAA----------CGG
((..(....)..)).(((((((((((((((((.((((((....))).......((((.(....).))))......))).))))))).)))))))).)).........----------... ( -32.80)
>DroYak_CAF1 54664 119 - 1
GUUGUGACCGUGGCACAGGGUGCUCAAUGAGAAGGGGAAUAACUCCUGGGGCUUCCAUCGAAAGUUGGAUAA-AACCUGUUUUAUUCGGGCACUAUUGGAUAAUUAACUUAUUGCAUCGA
.(((((.(....))))))(((((((((((((((((((.....)))))(((...((((.(....).))))...-..))).))))))).))))))).......................... ( -33.80)
>consensus
AUUGUGACCGUGGCACAGGGUGCUCAAUGAGAAGGGGAAUAACUCCUGGGGCUUCCAUCGAAAGUUGGAUAAAAACCUGUUUUAUUCGGGCACUAUUGGAUAAUUAACUAAUUGCAUCGA
.(((((.(....)))))).((((((((((((((((((.....)))))(((...((((.(....).))))......))).))))))).))))))........................... (-29.88 = -29.96 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:03 2006