Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 16,196,595 – 16,196,703 |
Length | 108 |
Max. P | 0.687040 |
Location | 16,196,595 – 16,196,703 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 78.48 |
Mean single sequence MFE | -30.10 |
Consensus MFE | -17.51 |
Energy contribution | -18.73 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.04 |
Mean z-score | -1.72 |
Structure conservation index | 0.58 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.687040 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16196595 108 - 23771897 AGCUAAUAACUUAU-AAAAUAUCAUU--UAGUUAAUACCCUCAAAGUCAGCAAGCCGGAGAAGGCGCAAAUGUUCGAGAACAUGGUCAUCCGCAUGGCCCAGAUGGGUCAG ((((((........-..........)--)))))....................(((......)))((..(((((....)))))((....)))).((((((....)))))). ( -22.57) >DroVir_CAF1 21517 104 - 1 CGCUA---AUGU----CAAUCUCCAUUGCAGUCAACACACUGAAAGUGAGCAAGCCGGAAAAGGCGCAAAUGUUCGAGAACAUGGUCAUACGCAUGGCCCAAAUGGGCCAG .((..---((((----((.((((.....((((......)))).....(((((.(((......))).....)))))))))...))).)))..)).((((((....)))))). ( -31.30) >DroPse_CAF1 51683 111 - 1 GCUUCAGAAUGCUUAAAAAUCUCGAUUGCAGUUAACACACUGAAAGUGAGCAAGCCAGAAAAGGCCCAGAUGUUCGAGAACAUGGUCAUCCGCAUGGCCCAGAUGGGGCAG ((((((...((........((((((((((.(....).(((.....))).))))(((......)))........))))))....((((((....))))))))..)))))).. ( -30.10) >DroMoj_CAF1 18388 107 - 1 GACUA---ACACAA-ACGAUCUCAAUUGCAGUGAACACACUGAAAGUGAGCAAACCGGACAAAGCACAAAUGUUCGAGAACAUGGUCAUACGUAUGGCCCAAAUGGGCCAA (((((---......-.....((((....(((((....)))))....)))).....((((((.........))))))......))))).......((((((....)))))). ( -32.70) >DroAna_CAF1 31774 108 - 1 GAUUAAUAAAGGUU-UGUUUUCUUUU--CAGUGAACACACUCAAGGUGAGCAAGCCCGAAAAGGCACAAAUGUUCGAGAACAUGGUCAUUCGGAUGGCCCAGAUGGGUCAG ..........((((-(((((.((((.--.((((....)))).)))).)))))))))((((..(((....(((((....))))).))).))))..((((((....)))))). ( -33.50) >DroPer_CAF1 51642 111 - 1 GCUUCAGAAUGCUUCAAAAUCUCGAUUGCAGUCAACACACUGAAAGUGAGCAAGCCAGAAAAGGCCCAGAUGUUCGAGAACAUGGUCAUCCGCAUGGCCCAGAUGGGGCAG .........(((((((...((((((((((.(....).(((.....))).))))(((......)))........))))))....((((((....))))))....))))))). ( -30.40) >consensus GACUAA_AAUGCUU_AAAAUCUCAAUUGCAGUCAACACACUGAAAGUGAGCAAGCCGGAAAAGGCACAAAUGUUCGAGAACAUGGUCAUCCGCAUGGCCCAGAUGGGCCAG ............................((((......))))...((((.(..(((......)))....(((((....)))))).)))).....((((((....)))))). (-17.51 = -18.73 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:02 2006