Locus 6099

Sequence ID 3L_DroMel_CAF1
Location 16,192,604 – 16,192,707
Length 103
Max. P 0.505559
window9799

overview

Window 9

Location 16,192,604 – 16,192,707
Length 103
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 83.88
Mean single sequence MFE -37.00
Consensus MFE -23.33
Energy contribution -23.87
Covariance contribution 0.53
Combinations/Pair 1.21
Mean z-score -2.35
Structure conservation index 0.63
SVM decision value -0.05
SVM RNA-class probability 0.505559
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16192604 103 + 23771897
UAUAAAGUUGUGCUCUUUGACAUUUAGUUGGAGAAGUUUCUGGGGUGGCAGCUCCAGAAGUUGUUCCUCCGUGUGGCCGACGGGCAGUGCCCAGGGUUUCUUC
......((((.((((((..((.....))..)))).......((((..((((((.....))))))..)))).....))))))((((...))))........... ( -33.70)
>DroSec_CAF1 11520 103 + 1
UAUAAAGUGGUCUUCUUUGACAUUUAGUUGGAGGAGUUUCUGGGGUGUCUGCUCCAGAAGUUGUUCCUCCGUGUGACCUACGGGCAGUGCCCAGGAUUGCUUC
....(((..(((((......(((.....((((((((((((((((((....))))))))))...)))))))).)))......((((...)))))))))..))). ( -39.90)
>DroSim_CAF1 11671 103 + 1
UAUAAAGUGGUCUUCUUUGACAUUUAGUUGGAGGAGUUUCUGGGGUGUCUGCUCCAGAACUUGUUCCUCCGUGUGACCAACGGGCAGUGCCCAGGGUUGCUUC
..((((...(((......))).))))...(((((((.(((((((((....)))))))))....)))))))..(..(((...((((...))))..)))..)... ( -40.50)
>DroEre_CAF1 11085 103 + 1
UAUAAAGUUUUGCUCUUUGACAUUUAGUUGGAGGAGUUUCUGGGGUGGCUGCUCCAGAAGUAGUUCCUCCGUAUGCCCUACUGGAUGUGCCCAGGGUUUCUUC
....(((....(((((..((((((((((((((((((((((((((((....))))))))))...))))))))........))))))))).)..)))))..))). ( -36.00)
>DroYak_CAF1 47827 103 + 1
UAUAAAGUUUCGCUCCUUGACAUUUAGGUGGAGGAGUUUCUGGGGUGGCUGCUCCAAAAGUAAUUCCUCUGUAUGCCCUACUGGGUGGGCCCAGGGUUUCUUC
..............(((((........(..((((((((..((((((....)))))).....))))))))..)..((((........)))).)))))....... ( -31.80)
>DroAna_CAF1 28083 103 + 1
GAUGAAGCUGUUCUCUUUGACAUUCAGUUGGAGCAGCUUCUGGGGUGGCUGUUCUAGAAGGAGAUCCUCCGUGUGGCCCACUGGAUGAUUCCAGGGCUUCUUU
...(((((((((((..(((.....)))..))))))))))).((((((((..(....(.(((....))).)..)..)))..(((((....))))).)))))... ( -40.10)
>consensus
UAUAAAGUUGUGCUCUUUGACAUUUAGUUGGAGGAGUUUCUGGGGUGGCUGCUCCAGAAGUAGUUCCUCCGUGUGACCUACGGGCAGUGCCCAGGGUUUCUUC
..............(((((.(((.....((((((((((((((((((....))))))))))...)))))))).))).((....)).......)))))....... (-23.33 = -23.87 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:01 2006