Locus 6098

Sequence ID 3L_DroMel_CAF1
Location 16,191,427 – 16,191,525
Length 98
Max. P 0.626530
window9798

overview

Window 8

Location 16,191,427 – 16,191,525
Length 98
Sequences 5
Columns 104
Reading direction reverse
Mean pairwise identity 86.77
Mean single sequence MFE -40.52
Consensus MFE -23.96
Energy contribution -25.88
Covariance contribution 1.92
Combinations/Pair 1.04
Mean z-score -2.84
Structure conservation index 0.59
SVM decision value 0.19
SVM RNA-class probability 0.626530
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16191427 98 - 23771897
CCAGCGGAAGAAGUUCGGUGCCUCGUAAAUGGAGCGCCGCAGGAUGAAGUUGAAGUGGAGUGGAGUGGCGAAGCU------CCAGCAUCACUUUGGCUUACCCA
...((.(((....)))(((((..((....))..))))))).((...((((..(((((..(((((((......)))------))).)..)))))..))))..)). ( -38.20)
>DroSec_CAF1 10341 98 - 1
CCGGCGGAAGAAGUUCGGUGCCUCGUAAAUGGAGCGCCGCCGGAUGAAGUUGAAGUGGAGUGGAGUGGCGGAGCU------CCAGCUUCACUUUGGCUUACCCA
(((((.(((....)))(((((..((....))..))))))))))...((((..((((((((((((((......)))------))).))))))))..))))..... ( -48.10)
>DroSim_CAF1 10495 98 - 1
CCGGCGGAAGAAGUUCGGUGCCUCGUAAAUGGAGCGCCGCCGGAUGAAGUUGAAGUGGAGUGGAGUGGCGGAGCU------CCAGCUUCACUUUGGCUUACCCA
(((((.(((....)))(((((..((....))..))))))))))...((((..((((((((((((((......)))------))).))))))))..))))..... ( -48.10)
>DroEre_CAF1 9883 98 - 1
CCAGCGGAAGAAGUUCGGUGCCUCGUAAAUGGAGCGCCGCAGGAUGAAGUUGA------GUGGAGUGGAGGAUCUCCAUCUCCAUCUCCACUUUGGCUUACCCA
...((.(((....)))(((((..((....))..))))))).((...((((..(------((((((((((((.......)))))).)))))).)..))))..)). ( -38.30)
>DroYak_CAF1 46654 87 - 1
CCGGCGGAAGAAAUACGGUGCCUCGUAAAUGGAGCGCCGCAGGAUGAAGUUGA------GUGG-----AGGAUCU------CCAUCUCCACUUUGGCUUACCCA
....(....).....((((((..((....))..))))))..((...((((..(------((((-----(((....------...))))))).)..))))..)). ( -29.90)
>consensus
CCGGCGGAAGAAGUUCGGUGCCUCGUAAAUGGAGCGCCGCAGGAUGAAGUUGAAGUGGAGUGGAGUGGCGGAGCU______CCAGCUUCACUUUGGCUUACCCA
....(....).....((((((..((....))..))))))..((...((((..((((((.((((...(((...)))......))).).))))))..))))..)). (-23.96 = -25.88 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:10:00 2006