Locus 6097

Sequence ID 3L_DroMel_CAF1
Location 16,190,823 – 16,190,931
Length 108
Max. P 0.532681
window9797

overview

Window 7

Location 16,190,823 – 16,190,931
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 96.10
Mean single sequence MFE -32.32
Consensus MFE -30.45
Energy contribution -30.49
Covariance contribution 0.04
Combinations/Pair 1.04
Mean z-score -1.08
Structure conservation index 0.94
SVM decision value -0.00
SVM RNA-class probability 0.532681
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16190823 108 + 23771897
CAAAGUGGUCAUGACCCAGCCCAAGUCCAGGCCUCUGCUGGCAUUCGAAUAUGGCUGCGGGAUACUCGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACCCAA
....((((.(....(((((((....((...(((......)))....))....))))).))(((.(((((.(......)))))).)))...........).)))).... ( -33.80)
>DroSec_CAF1 9744 108 + 1
CAAAGUGGUCAUGACCCAGCCCAAGUGCAGGCCUCUCCUGGCAUUCGAAUAUGGCUGCGGGAUACUGGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACCCAA
....((((.(....(((((((....((...(((......)))...)).....))))).))(((.((.((.(......))).)).)))...........).)))).... ( -29.10)
>DroSim_CAF1 9898 108 + 1
CAAAGUGGUCAUGACCCAGCCCAAGUGCAGGCCUCUCCUGGCAUUCGAAUAUGGCUGCGGGAUACUCGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACCCAA
....((((.(....(((((((....((...(((......)))...)).....))))).))(((.(((((.(......)))))).)))...........).)))).... ( -32.90)
>DroEre_CAF1 9299 105 + 1
CAAAGUGGUCAUGACCCAGCCCAAGUGCAGGCCUCUCCUGGCAUUCGAAUAUGGCUGCGGGAUACUCGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACC---
....((((.(....(((((((....((...(((......)))...)).....))))).))(((.(((((.(......)))))).)))...........).)))).--- ( -32.90)
>DroYak_CAF1 46080 105 + 1
CAAUGUGGUCAUGACUCAGCCCAAGUGCAUGCCUCUCCUGGCAUUCGAAUAUGGCUGCGGGAUACUCGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACC---
....((((.(....(.(((((....((.(((((......))))).)).....))))).).(((.(((((.(......)))))).)))...........).)))).--- ( -32.90)
>consensus
CAAAGUGGUCAUGACCCAGCCCAAGUGCAGGCCUCUCCUGGCAUUCGAAUAUGGCUGCGGGAUACUCGGACUUUUUUGCCGAGAAUCAGAAACAGAACGCCCACCCAA
....((((.(....(((((((.........(((......)))..........))))).))(((.(((((.(......)))))).)))...........).)))).... (-30.45 = -30.49 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:59 2006