| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,188,355 – 16,188,458 |
| Length | 103 |
| Max. P | 0.742537 |
| Location | 16,188,355 – 16,188,458 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 85.02 |
| Mean single sequence MFE | -23.66 |
| Consensus MFE | -18.87 |
| Energy contribution | -19.37 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.742537 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16188355 103 + 23771897 U-----GCUUGCUCCUUAUUUGCUCCUUGCGAACUCCCCGUUCAAUGUAUCUCCCUUUAUUGUGCAUUUGUCCUUUGGCAGCGCAGCGAAGGACAAAAUUCAAUGAAC .-----...(((.........((.....))((((.....))))...)))......(((((((....(((((((((((.(......))))))))))))...))))))). ( -23.10) >DroSec_CAF1 7345 103 + 1 U-----GUUUGCUCCUUAUUUGCUCCUUGCGAACUCCCCGUUCAAUGUAUCUUCCUUUAUUGUGCAUUUGUCCUUUGGCAGCGCAGCGAAGGACAAAAUUCAAUGAAC .-----((((((................)))))).....(((((.((.....(((((..((((((...((((....))))))))))..))))).......)).))))) ( -26.59) >DroSim_CAF1 7463 103 + 1 U-----GUUUGCUCCUUAUUUGCUCCUUGCGAACUCCCCGUUCAAUGUAUCUCGCUUUAUUGUGCAUUUGUCCUUUGGCAGCGCAGCGAAGGACAAAAUUCAAUGAAC .-----((((((................)))))).....(((((.((......((........)).(((((((((((.(......))))))))))))...)).))))) ( -25.39) >DroEre_CAF1 6776 95 + 1 -------------CUUUAUUUGCUCCUUGCGAACUCCCCGUUCAAUGUAUCUCUCUUUAUUGUGCAUUUGUCCUUUGGCAGCUCACCGAAGGACAAAAUUCAAUGAAC -------------........((.....))((((.....))))............(((((((....((((((((((((.......))))))))))))...))))))). ( -25.50) >DroYak_CAF1 43657 95 + 1 -------------CUUAAUUUUCUCCUUGCGAACUCCCCGUUCAAUGUAUCUCUCUUUAUUGUGCAUUUGUCCUUUGGCAGCUCAGCGAAGGACAAAAUUCAAUGAAC -------------.................((((.....))))............(((((((....(((((((((((.(......))))))))))))...))))))). ( -21.20) >DroAna_CAF1 23876 105 + 1 UCGGGUCCUUGCCACUUUCUUCCUC---UAUUACUCCUUAUUCAAUGUAUCUCUUUUUAUUGUGCAUUUGUCCUUUGGCAAGGCAACGAAGGACAAAAUUCAAUGAAC ...(((....)))............---...........................(((((((....(((((((((((.........)))))))))))...))))))). ( -20.20) >consensus U_____G_UUGCUCCUUAUUUGCUCCUUGCGAACUCCCCGUUCAAUGUAUCUCUCUUUAUUGUGCAUUUGUCCUUUGGCAGCGCAGCGAAGGACAAAAUUCAAUGAAC ..............................((((.....))))............(((((((....(((((((((((.........)))))))))))...))))))). (-18.87 = -19.37 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:58 2006