Locus 6095

Sequence ID 3L_DroMel_CAF1
Location 16,183,642 – 16,183,808
Length 166
Max. P 0.900061
window9794 window9795

overview

Window 4

Location 16,183,642 – 16,183,741
Length 99
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 90.17
Mean single sequence MFE -23.18
Consensus MFE -19.99
Energy contribution -20.18
Covariance contribution 0.20
Combinations/Pair 1.22
Mean z-score -1.66
Structure conservation index 0.86
SVM decision value 0.38
SVM RNA-class probability 0.712158
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16183642 99 - 23771897
CUGCAACAUUCUUAUUCUCGACUUGAAUAAAAAUGAUGUUGCUUGUGUCUGCGCCGUUCAUGCCACUCUACCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((.((((((.......))))))....))))))))..(((....))).(((((((((.(((((.(.....).)))))))))....))))).. ( -25.60)
>DroSec_CAF1 2730 99 - 1
CUGCAACAUUCUUAUUCUCUACUUGAAUAAAAAUGAUGUUGCUUGUGUCUGCGCCGUUCAUGCCACUCUGCCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((.((((((.......))))))....))))))))..(((....))).(((((((((.((((((......).)))))))))....))))).. ( -25.30)
>DroSim_CAF1 2830 99 - 1
CUGCAACAUUCUUAUUCUCUACUUGAAUAAAAAUGAUGUUGCUUGUGUCUGCGCCGUUCAUGCCACUCUGCCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((.((((((.......))))))....))))))))..(((....))).(((((((((.((((((......).)))))))))....))))).. ( -25.30)
>DroEre_CAF1 2068 99 - 1
CUGCAACAUUCUUAUUCUCCACUUGAAUAAAAAUGAUGUUGCUUGUGUCUGCGCCGUUCAUGCCACUCUACCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((.((((((.......))))))....))))))))..(((....))).(((((((((.(((((.(.....).)))))))))....))))).. ( -25.60)
>DroYak_CAF1 39096 99 - 1
CUGCAACAUUCCUAUUCUCUACUUGAAUAAAAAUGAUCUUGCUUGUGUCUGCAUCGUUCAUGCCACUCUACCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((..(((((.......)))))..))))...)))).............(((((((((.(((((.(.....).)))))))))....))))).. ( -19.60)
>DroAna_CAF1 19690 99 - 1
CUGCAACAUUCUUCUUCUCUUUUUGAAUAAAAAUUAUGCUGCCUGCUUGGCUGUUGUUCGGCUUUCUCUGCCCCACCGUUAGUGGAUAUUUUUGGACCA
..(((..(((.((.(((.......))).)).)))..))).(((.....)))....(((((((.......)))((((.....))))........)))).. ( -17.70)
>consensus
CUGCAACAUUCUUAUUCUCUACUUGAAUAAAAAUGAUGUUGCUUGUGUCUGCGCCGUUCAUGCCACUCUACCCCACCGUUAGAGGGUAUUUUUGGACCA
..((((((((.((((((.......))))))....))))))))..(((....))).(((((((((.(((((.(.....).)))))))))....))))).. (-19.99 = -20.18 +   0.20)

alignment

Postscript

secondary structure

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dotplot

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Window 5

Location 16,183,707 – 16,183,808
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 94.16
Mean single sequence MFE -23.18
Consensus MFE -19.04
Energy contribution -19.16
Covariance contribution 0.12
Combinations/Pair 1.11
Mean z-score -1.79
Structure conservation index 0.82
SVM decision value 1.01
SVM RNA-class probability 0.900061
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16183707 101 + 23771897
AUUUUUAUUCAAGUCGAGAAUAAGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGCUGGGGAGCAGAGGUGGCCAACAGGGCAGCAACCAAAACA
((((((((((.......))))))))))(((((.(..(((((.(((......)))..((..(((.(....)...)))..)))))))..).)))))....... ( -24.50)
>DroSec_CAF1 2795 101 + 1
AUUUUUAUUCAAGUAGAGAAUAAGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGCUGGGGAGCAGAGGUGGCCAACAGGGCGACAACCAAAACA
.(((((((((.......)))))))))((((((....(((((.(((......)))..((..(((.(....)...)))..))))))).))))))......... ( -24.00)
>DroSim_CAF1 2895 101 + 1
AUUUUUAUUCAAGUAGAGAAUAAGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGCUGGGGAGCAGAGGUGGCCAACAGGGCGACAACCAAAACA
.(((((((((.......)))))))))((((((....(((((.(((......)))..((..(((.(....)...)))..))))))).))))))......... ( -24.00)
>DroEre_CAF1 2133 101 + 1
AUUUUUAUUCAAGUGGAGAAUAAGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGCUGGGGAGCAGAGGUGGCCAACAGGGCGACAACCAAAACA
.(((((((((.......)))))))))((((((....(((((.(((......)))..((..(((.(....)...)))..))))))).))))))......... ( -24.00)
>DroYak_CAF1 39161 93 + 1
AUUUUUAUUCAAGUAGAGAAUAGGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGUUGGGAAGCAGAGGUGGCC--------GACAACCAAAACA
((((((((((.......))))))))))..(((((.....))))).......((...((..(((((...((....))..))--------)))..))...)). ( -19.40)
>consensus
AUUUUUAUUCAAGUAGAGAAUAAGAAUGUUGCAGAAUUGUUGCACAAAUAAGUGGAGGAGGCUGGGGAGCAGAGGUGGCCAACAGGGCGACAACCAAAACA
((((((((((.......))))))))))(((((((.....)))).........(((.....(((....)))....((.(((.....))).))..))).))). (-19.04 = -19.16 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:57 2006