Locus 6090

Sequence ID 3L_DroMel_CAF1
Location 16,173,229 – 16,173,341
Length 112
Max. P 0.959169
window9783

overview

Window 3

Location 16,173,229 – 16,173,341
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 93.45
Mean single sequence MFE -42.83
Consensus MFE -40.83
Energy contribution -40.70
Covariance contribution -0.13
Combinations/Pair 1.05
Mean z-score -1.97
Structure conservation index 0.95
SVM decision value 1.50
SVM RNA-class probability 0.959169
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16173229 112 - 23771897
CCGUCUGGCAGAUCGUCCAAAUGGCUGGGGUUUCCAUAAGGUGGUGCCUUGUGGCUUGACCACCUGCAAUUUGUGUUCGGCUCUCGGGCAUUGGGAUUGAUUUUGCCGGCAA
..(.((((((((((((((((((.((.((((((.((((((((.....))))))))...)))).)).)).))))(((((((.....)))))))..))).))).))))))))).. ( -46.00)
>DroSec_CAF1 30936 112 - 1
CCGUCUGGCAGAUCGUCCAAAUGGCUGGGGUUCCUAUAAGGUGGUGCCUUGUGGCUUGACCACCUGCAAUUUGUGUUCGGCUCUCGGGCAUUGGCAUUGAUUUUGCCGGCAA
..(.(((((((((((.((((...(((.(((..((....((((((((((....)))...)))))))((.....))....))..))).))).))))...))).))))))))).. ( -42.40)
>DroSim_CAF1 33574 112 - 1
CCGUCUGGCAGAUCGUCCAAAUGGCUGGGGUUCCCAUAAGGUGGUGCCUUGUGGCUUGACCACCUGCAAUUUGUGUUCGGCUCUCGGGCAUUGGCAUUGAUUUUGCCGGCAA
..(.(((((((((((.((((...((.((((((.((((((((.....))))))))...)))).)).))......((((((.....))))))))))...))).))))))))).. ( -43.00)
>DroEre_CAF1 30912 106 - 1
CCGUCUGGCACAUCGUCCAAAUCGCUGGGGUUCCCAUAAGGUGGUGCCUUGUGGCUUGACCACCUGCAAUUUGUGCUCGGGUCCCGGACA------UUGAUUUUGCCGGCAA
..(.((((((.((((..(((((.((.((((((.((((((((.....))))))))...)))).)).)).)))))..)((((...))))...------..)))..))))))).. ( -39.90)
>consensus
CCGUCUGGCAGAUCGUCCAAAUGGCUGGGGUUCCCAUAAGGUGGUGCCUUGUGGCUUGACCACCUGCAAUUUGUGUUCGGCUCUCGGGCAUUGGCAUUGAUUUUGCCGGCAA
..(.(((((((((((..(((((.((.((((((.((((((((.....))))))))...)))).)).)).)))))((..(((...)))..)).......))).))))))))).. (-40.83 = -40.70 +  -0.13)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:46 2006