Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,773,215 – 1,773,312 |
Length | 97 |
Max. P | 0.898928 |
Location | 1,773,215 – 1,773,312 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 91.96 |
Mean single sequence MFE | -30.42 |
Consensus MFE | -26.98 |
Energy contribution | -27.57 |
Covariance contribution | 0.59 |
Combinations/Pair | 1.19 |
Mean z-score | -1.71 |
Structure conservation index | 0.89 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.898928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1773215 97 - 23771897 CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC .(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70) >DroSec_CAF1 10524 97 - 1 CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC .(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70) >DroSim_CAF1 10491 97 - 1 CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC .(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70) >DroEre_CAF1 10496 97 - 1 CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUGUUUAUGGAGAUGCUGGCCGAUUUAUCACGGGAUCUGGAUAACUUUUAAGUUUAAAAC .((..(.....((((((.......(((((....((((((.(....).)))))))))))((....)).)))))))..))................... ( -27.80) >DroYak_CAF1 10417 97 - 1 CUCUGGUGAUAGUCCCGAAGACGAGGCAAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGAUUUAUCACGCGAUCUGGAUAACUUUUAAGUUUAAAAC .....(((((((((.....)))..(((......((((((((....))))))))..)))....))))))............................. ( -24.80) >DroAna_CAF1 10056 95 - 1 GUCUGUAGAGAGCCCCGAAGACGAGGCUAAGUCGCACCUCUUCAUGGAGAUGUUGGCCGACCUUUCGCGCGAUCUGGAUAGCUUUUAA--UAAAAAA ((((..(((..((..(((((....(((((....(((.((((....)))).))))))))....))))).))..))))))).........--....... ( -22.80) >consensus CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC .(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... (-26.98 = -27.57 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:37 2006