Locus 609

Sequence ID 3L_DroMel_CAF1
Location 1,773,215 – 1,773,312
Length 97
Max. P 0.898928
window934

overview

Window 4

Location 1,773,215 – 1,773,312
Length 97
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 91.96
Mean single sequence MFE -30.42
Consensus MFE -26.98
Energy contribution -27.57
Covariance contribution 0.59
Combinations/Pair 1.19
Mean z-score -1.71
Structure conservation index 0.89
SVM decision value 1.01
SVM RNA-class probability 0.898928
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1773215 97 - 23771897
CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC
.(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70)
>DroSec_CAF1 10524 97 - 1
CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC
.(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70)
>DroSim_CAF1 10491 97 - 1
CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC
.(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... ( -35.70)
>DroEre_CAF1 10496 97 - 1
CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUGUUUAUGGAGAUGCUGGCCGAUUUAUCACGGGAUCUGGAUAACUUUUAAGUUUAAAAC
.((..(.....((((((.......(((((....((((((.(....).)))))))))))((....)).)))))))..))................... ( -27.80)
>DroYak_CAF1 10417 97 - 1
CUCUGGUGAUAGUCCCGAAGACGAGGCAAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGAUUUAUCACGCGAUCUGGAUAACUUUUAAGUUUAAAAC
.....(((((((((.....)))..(((......((((((((....))))))))..)))....))))))............................. ( -24.80)
>DroAna_CAF1 10056 95 - 1
GUCUGUAGAGAGCCCCGAAGACGAGGCUAAGUCGCACCUCUUCAUGGAGAUGUUGGCCGACCUUUCGCGCGAUCUGGAUAGCUUUUAA--UAAAAAA
((((..(((..((..(((((....(((((....(((.((((....)))).))))))))....))))).))..))))))).........--....... ( -22.80)
>consensus
CUCUGGCGAUAGUCCCGAAGACGAGGCCAAGUCGCAUCUCUUCAUGGAGAUGCUGGCCGACUUAUCGCGGGAUCUGGAUAACUUUUAAGUUUAAAAC
.(((.(((((((((.((....)).(((((....((((((((....)))))))))))))))).)))))).)))......................... (-26.98 = -27.57 +   0.59) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:46:37 2006