| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,170,304 – 16,170,414 |
| Length | 110 |
| Max. P | 0.888180 |
| Location | 16,170,304 – 16,170,414 |
|---|---|
| Length | 110 |
| Sequences | 4 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 84.62 |
| Mean single sequence MFE | -37.52 |
| Consensus MFE | -23.33 |
| Energy contribution | -25.39 |
| Covariance contribution | 2.06 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.888180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16170304 110 + 23771897 ACCGAAAGGUGUCGAGGGACAUAUGUCCCUCCUAGACAGAUCCU-CCUCUCUGCCUCAUCCGCUCCAAAAAAAGGCAUCAGAAUGCCGGAAUGACGAGCGGACAGAGCAGC (((....)))((((((((((....)))))))...))).......-.....((((((..(((((((........(((((....)))))........))))))).)).)))). ( -44.89) >DroSec_CAF1 27948 106 + 1 ACCGAAAGGUGUCGAGGGACAUAU---UCUCCUAGAUAGAUCCCCCCUCUCCGCCUGCGCCGCUCCAAAAAAAGGCAUCAGAAUGCCGGAAUGACGAGCGGACA--GCACC ......(((((..(((((......---(((.......)))....)))))..)))))((.((((((........(((((....)))))........))))))...--))... ( -36.59) >DroSim_CAF1 30536 106 + 1 ACCGAAAGGUGUCGAGGGACAUAU---UCUCCUAGACAGAUCCCCCCUCUCCGCCUGCGCCGCUCCAAAAAAAGGCAUCAGAAUGCCGGAAUGACGAGCGGACA--GCACC ......(((((..(((((......---(((.......)))....)))))..)))))((.((((((........(((((....)))))........))))))...--))... ( -36.69) >DroEre_CAF1 27796 94 + 1 ACCGAAAGGUGUCGAGGGACAUAU---UCUCCUAGACAGAUCCU-CCUCUCCGGC-----------CAAAAAAGGCAUCAGUCUGCCGGAGUGCCGGGCGGCCA--GCAAC (((....)))(((.(((((.....---)).))).)))....((.-.(.(((((((-----------......((((....))))))))))).)..))((.....--))... ( -31.90) >consensus ACCGAAAGGUGUCGAGGGACAUAU___UCUCCUAGACAGAUCCC_CCUCUCCGCCUGCGCCGCUCCAAAAAAAGGCAUCAGAAUGCCGGAAUGACGAGCGGACA__GCACC (((....)))(((.(((((........)).))).)))...............((.....((((((........(((((....)))))........)))))).....))... (-23.33 = -25.39 + 2.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:45 2006