Locus 6088

Sequence ID 3L_DroMel_CAF1
Location 16,169,411 – 16,169,523
Length 112
Max. P 0.942553
window9781

overview

Window 1

Location 16,169,411 – 16,169,523
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 92.41
Mean single sequence MFE -37.90
Consensus MFE -34.61
Energy contribution -35.43
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.96
Structure conservation index 0.91
SVM decision value 1.33
SVM RNA-class probability 0.942553
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16169411 112 - 23771897
UUCGCAAGUGUAUUUGAAUCUUCGGAGUUGCAAGCUGUGCUCCCCUCUUGAUUUGCCGCUCCAGUUGUUAUCAGUCGCUGUGGCAGAGCGGCAGAUACAGAUACUCAAAACG
.......(.(((((((.......(((((.(....)...))))).......(((((((((((....(((((.(((...))))))))))))))))))).))))))).)...... ( -35.60)
>DroSec_CAF1 27120 110 - 1
--CUCUAGUGUAUCUGAAUCUUCGGAGUUGCAAGCUGAGCUCCCCUCUUGAUUUGCCGCUCCAGUUGUUAUCAGUGGCUGUGGCAGAGCGGCAGAUACAGAUACUCAAAACG
--.....(.(((((((.......((((((........)))))).......(((((((((((((((..(.....)..)))).....))))))))))).))))))).)...... ( -40.40)
>DroSim_CAF1 29720 112 - 1
UUCGCAAGUGUAUCUGAAUCUUCGGAUUUGCAAGCUGAGCUCCCCUCUUGAUUUGCCGCUCCAGUUGUUAUCAGUGGCUGUGGCAGAGCGGCAGAUACAGAUACUCAAAACG
.......(.(((((((((((....))))..((((..(......)..))))(((((((((((((((..(.....)..)))).....))))))))))).))))))).)...... ( -37.80)
>DroEre_CAF1 26739 112 - 1
UUUGCAAGUGUAUCUGAGCCUUCGGAGUUGGAACACGACCGCCCCUCUUGAUUUGCCGCUCCAGUUGUUAUCAGUGGCUGUGGCAGAGCGGCAGAUACAGAUACUCAAAACG
.......(.(((((((.......((.((((.....))))..)).......(((((((((((((((..(.....)..)))).....))))))))))).))))))).)...... ( -37.80)
>consensus
UUCGCAAGUGUAUCUGAAUCUUCGGAGUUGCAAGCUGAGCUCCCCUCUUGAUUUGCCGCUCCAGUUGUUAUCAGUGGCUGUGGCAGAGCGGCAGAUACAGAUACUCAAAACG
.......(.(((((((.......((((((........)))))).......(((((((((((((((..(.....)..)))).....))))))))))).))))))).)...... (-34.61 = -35.43 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:44 2006