Locus 6087

Sequence ID 3L_DroMel_CAF1
Location 16,169,212 – 16,169,332
Length 120
Max. P 0.913592
window9780

overview

Window 0

Location 16,169,212 – 16,169,332
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 96.39
Mean single sequence MFE -40.02
Consensus MFE -37.70
Energy contribution -37.82
Covariance contribution 0.12
Combinations/Pair 1.03
Mean z-score -2.05
Structure conservation index 0.94
SVM decision value 1.09
SVM RNA-class probability 0.913592
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 16169212 120 - 23771897
GGUGGGAAUGGAGUCCAGGCGGAUCGGCAGAUCCAAAGGGGCGGGUAUAAGGGUAUUAAUGCCAUGUCCAGCAAAUCGUUUUGACCAUAACCCCACCACCAUAAGCAGAAAACGAGCACA
((((((..((..(((.(((((((((....)))))....((((((((((.((....)).))))).)))))........)))).)))..))..)))))).......((.........))... ( -37.90)
>DroSec_CAF1 26918 120 - 1
GGUGGGAAUGGAGUCCAGGCGGAUCGGCAGAUCCAAAGGGGCGGGCAUAAGGGUAUUAAUGCCAUGUCCAGCAAAUCGUUUUGACCAUAACCCCACCACCAUAAGCAGAAAACGAGCACA
((((((.((((.((((....(((((....)))))....))))((((((...((((....))))))))))..((((....)))).))))...)))))).......((.........))... ( -40.80)
>DroSim_CAF1 29518 120 - 1
GGUGGGAAUGGAGUCCAGGCGGAUCGGCAGAUCCAAAGGGGCGGGCAUAAGGGUAUUAAUGCCAUGUCCAGCAAAUCGUUUUGACCAUAACCCCACCACCAUAAGCAGAAAACGAGCACA
((((((.((((.((((....(((((....)))))....))))((((((...((((....))))))))))..((((....)))).))))...)))))).......((.........))... ( -40.80)
>DroEre_CAF1 26541 119 - 1
GGUGGGAAUGGAGUCCAGGAGGAUCCGCAGAUCCC-AGGGGCGGGGACCGGGGUAUUAAUGCCAUGUCCAGCAAAUCGUUUUGACCAUAACCCCACCACCAUAAGCAGAAAACGAGCACA
((((((.((((.((((..(.(((((....))))))-..))))..((((...((((....))))..))))..((((....)))).))))...)))))).......((.........))... ( -40.60)
>consensus
GGUGGGAAUGGAGUCCAGGCGGAUCGGCAGAUCCAAAGGGGCGGGCAUAAGGGUAUUAAUGCCAUGUCCAGCAAAUCGUUUUGACCAUAACCCCACCACCAUAAGCAGAAAACGAGCACA
((((((.((((.((((....(((((....)))))....))))(((((....((((....)))).)))))..((((....)))).))))...)))))).......((.........))... (-37.70 = -37.82 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:43 2006