| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,168,814 – 16,168,923 |
| Length | 109 |
| Max. P | 0.625267 |
| Location | 16,168,814 – 16,168,923 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 93.88 |
| Mean single sequence MFE | -22.97 |
| Consensus MFE | -20.07 |
| Energy contribution | -21.07 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.625267 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16168814 109 - 23771897 GGUUAUUCCUACCAAUUCGCGUACGCGUCAGAGCUCUGACGUCGCGCCGUCAGCCAGACGUUCUCAAUAAUAUUCAAAUCACUAGCCGAAAAUAAUAACAACAAAUCUU (((((.............((((..(((((((....))))))).))))((((.....))))......................)))))...................... ( -24.70) >DroSec_CAF1 26524 109 - 1 GGUUAUUCCUACCGAUUCGCGUACGCGUCAGAACUCUGACGUCGCGCCGUCAGCCAGACGUUCUCAAUAAUAUUCAAAUCACUAGCCGAAAAUAAUAACAACAAAUCUU (((((.............((((..(((((((....))))))).))))((((.....))))......................)))))...................... ( -24.70) >DroSim_CAF1 29125 102 - 1 GGUUAUUCCUACCGAUUCG------CGUCAGAACUCUGACGUCGCGCCGUCACCCAGACGUUCUCA-UAAUAUUCAAAUCACUAGCCGAAAAUAAUAACAACAAAUCUU (((((.......((....(------((((((....)))))))..)).((((.....))))......-...............)))))...................... ( -19.50) >consensus GGUUAUUCCUACCGAUUCGCGUACGCGUCAGAACUCUGACGUCGCGCCGUCAGCCAGACGUUCUCAAUAAUAUUCAAAUCACUAGCCGAAAAUAAUAACAACAAAUCUU (((((............((((...(((((((....))))))))))).((((.....))))......................)))))...................... (-20.07 = -21.07 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:42 2006