| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 16,168,369 – 16,168,522 |
| Length | 153 |
| Max. P | 0.952116 |
| Location | 16,168,369 – 16,168,484 |
|---|---|
| Length | 115 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 89.64 |
| Mean single sequence MFE | -21.68 |
| Consensus MFE | -20.60 |
| Energy contribution | -20.41 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.48 |
| SVM RNA-class probability | 0.752829 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16168369 115 + 23771897 GCCAGUCGUCAGACAGAAGUGAAUAAUCAAUAUCAUUUGAUUACAUUGAUAACGCUUUUUUGUGCCGCUUUACUUUU-----UUUCCAUUCCCAUUUUUUUUUUUGCGGCUUUGUUCUGG .((((....((((.(((((((....(((((((((....)))...))))))..)))))))....(((((.........-----.......................)))))))))..)))) ( -21.65) >DroSec_CAF1 26076 109 + 1 GCCAGU---CAGACAGAAGUGAAUAAUCAAUAUCAUUUGAUUACAUUGAUAACGCUUUUUUGUGCCGCUUUAUUUUU---UGUUUCCAUUCCCAUUU-----AUUGCGGCUUUGUUCUGG .((((.---((((.(((((((....(((((((((....)))...))))))..)))))))....(((((..((.....---................)-----)..)))))))))..)))) ( -22.80) >DroSim_CAF1 28674 112 + 1 GCCAGU---CAGACAGAAGUGAAUAAUCAAUAUCAUUUGAUUACAUUGAUAACGCUUUUUUGUGCCGCUUUAUUUUUUUUUCUUUCCAUUCCCAUUU-----UUUGCGGCUUUGUUCUGG .((((.---((((.(((((((....(((((((((....)))...))))))..)))))))....(((((.............................-----...)))))))))..)))) ( -22.05) >DroEre_CAF1 25742 103 + 1 GCCAGU---CAGACAGAAGUGAAUAAUCAAUAUCAUUUGAUUACAUUGAUAACGCUUUUUCGUGCCGCUUU----UU-----UCUCCAUUCCUAUUU-----UUUGCGGUUUUGUUCUGG .((((.---((((.(((((((....(((((((((....)))...))))))..)))))))....(((((...----..-----...............-----...)))))))))..)))) ( -20.20) >consensus GCCAGU___CAGACAGAAGUGAAUAAUCAAUAUCAUUUGAUUACAUUGAUAACGCUUUUUUGUGCCGCUUUAUUUUU_____UUUCCAUUCCCAUUU_____UUUGCGGCUUUGUUCUGG .((((....((((.(((((((....(((((((((....)))...))))))..)))))))....(((((.....................................)))))))))..)))) (-20.60 = -20.41 + -0.19)
| Location | 16,168,409 – 16,168,522 |
|---|---|
| Length | 113 |
| Sequences | 3 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 87.72 |
| Mean single sequence MFE | -17.08 |
| Consensus MFE | -17.67 |
| Energy contribution | -17.45 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.12 |
| Structure conservation index | 1.03 |
| SVM decision value | 1.42 |
| SVM RNA-class probability | 0.952116 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 16168409 113 + 23771897 UUACAUUGAUAACGCUUUUUUGUGCCGCUUUACUUUU--UUUCCAUUCCCAUUUUUUUUUUUGCGGCUUUGUUCUGGGCACAUACUUUAUCGCA-CUGCGAUUC-CGAUAUCCAAAU .......((((.(((((......(((((.........--.......................)))))........)))).........(((((.-..)))))..-.).))))..... ( -16.89) >DroSec_CAF1 26113 112 + 1 UUACAUUGAUAACGCUUUUUUGUGCCGCUUUAUUUUUUGUUUCCAUUCCCAUUU-----AUUGCGGCUUUGUUCUGGGCUCUUACUUUAUCGCAACUGCGAUUCCCGAUAUCCAAAU .......((((.(((((......(((((..((.....................)-----)..)))))........)))).........(((((....)))))....).))))..... ( -19.04) >DroEre_CAF1 25779 103 + 1 UUACAUUGAUAACGCUUUUUCGUGCCGCUUU----UU--UCUCCAUUCCUAUUU-----UUUGCGGUUUUGUUCUGGGC-CUUACUUUAUCGCA-CUGCGAUUC-CGAUAUCCAAAU .......((((.(((((...((.(((((...----..--...............-----...)))))..))....))))-........(((((.-..)))))..-.).))))..... ( -15.30) >consensus UUACAUUGAUAACGCUUUUUUGUGCCGCUUUA_UUUU__UUUCCAUUCCCAUUU_____UUUGCGGCUUUGUUCUGGGC_CUUACUUUAUCGCA_CUGCGAUUC_CGAUAUCCAAAU .......((((.(((((......(((((..................................)))))........)))).........(((((....)))))....).))))..... (-17.67 = -17.45 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:09:41 2006